Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015659.1 Corchorus capsularis cultivar CVL-1 contig15680, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70275

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2791--2875
27
3.1
27
77
9
82
48
0
3
48
1.18
2835--2872
12
3.2
12
85
7
51
52
0
0
47
1.00
3179--3222
16
2.8
16
86
10
56
59
2
34
4
1.30
4251--4298
20
2.4
20
85
0
60
16
39
6
37
1.74
4525--4567
15
2.9
15
83
13
61
4
46
0
48
1.22
4804--4944
72
2.0
72
90
2
221
34
12
8
44
1.72
5141--5206
31
2.1
31
88
5
98
27
19
4
48
1.68
5931--6071
22
6.3
22
72
6
104
32
9
19
38
1.84
6107--6167
24
2.7
23
78
9
63
37
9
16
36
1.82
6173--6238
22
3.0
22
77
2
62
37
4
19
37
1.73
6181--6488
22
13.9
22
69
12
65
39
9
16
33
1.81
6261--6515
22
11.6
23
74
13
119
42
10
14
32
1.79
14183--14226
2
22.0
2
95
0
70
50
4
0
45
1.22
14188--14231
14
3.1
14
93
0
70
50
9
0
40
1.34
18835--18862
1
28.0
1
100
0
56
0
100
0
0
0.00
19966--19999
4
8.2
4
93
6
59
0
23
0
76
0.79
19965--19999
13
2.8
13
95
4
63
0
22
0
77
0.78
21062--21124
32
1.9
33
87
6
92
15
7
14
61
1.54
21677--21726
17
2.9
17
77
11
66
44
16
8
32
1.76
22196--22299
31
3.4
31
70
10
106
36
17
18
27
1.93
22136--22300
60
2.8
60
89
1
251
33
18
20
27
1.96
22339--22505
31
5.5
30
71
13
146
26
20
20
32
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
22369--22470
29
3.4
29
75
10
116
27
20
20
31
1.98
22337--22501
60
2.8
60
96
0
294
26
20
20
32
1.97
30003--30032
3
10.0
3
100
0
60
66
0
0
33
0.92
32362--32392
1
31.0
1
100
0
62
0
0
0
100
0.00
44249--44275
2
13.5
2
100
0
54
51
0
0
48
1.00
54956--55087
66
2.0
66
100
0
264
31
16
16
34
1.92

Tables:   1

The End!