Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015661.1 Corchorus capsularis cultivar CVL-1 contig15682, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12927

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
468--510
18
2.3
19
96
4
79
62
0
20
16
1.32
468--525
6
9.8
6
80
10
66
67
0
17
15
1.24
2720--2781
19
3.4
18
73
13
56
24
8
30
37
1.84
2775--2816
16
2.5
17
88
7
59
35
11
14
38
1.83
2809--2846
16
2.4
16
90
0
58
21
5
36
36
1.76
3207--3304
46
2.1
46
83
3
126
21
19
41
17
1.90
3221--3308
46
1.9
46
90
0
140
21
18
40
19
1.91
3216--3310
23
4.1
23
75
10
88
20
22
38
18
1.93
3388--3419
2
16.0
2
100
0
64
50
0
0
50
1.00
3777--4019
25
9.9
24
72
7
150
26
28
23
20
1.99
3776--4032
98
2.6
98
89
0
388
26
29
24
20
1.99
4114--4163
3
16.7
3
100
0
100
32
0
0
68
0.90
4549--4595
20
2.3
20
79
10
60
14
10
2
72
1.21
7409--7446
16
2.4
16
90
0
58
23
2
34
39
1.69
9463--9498
2
19.0
2
88
11
58
50
0
0
50
1.00
11175--11208
17
2.0
17
94
0
59
64
14
0
20
1.28

Tables:   1

The End!