Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015662.1 Corchorus capsularis cultivar CVL-1 contig15683, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  107150

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
636--670
7
5.0
7
86
13
54
85
0
0
14
0.59
637--685
21
2.3
21
89
6
73
83
0
0
16
0.64
637--685
11
4.7
10
87
7
71
83
0
0
16
0.64
1827--1916
33
3.0
28
68
27
69
25
30
11
33
1.90
5548--5830
99
2.9
98
90
2
433
20
29
17
32
1.96
5548--5830
148
1.9
148
89
2
435
20
29
17
32
1.96
5548--5830
49
5.7
49
91
2
424
20
29
17
32
1.96
10094--10138
22
2.1
21
84
12
56
26
6
33
33
1.83
11644--11695
24
2.2
24
82
6
61
57
3
0
38
1.17
19464--19496
6
5.5
6
96
0
57
48
0
36
15
1.45
36417--36443
1
27.0
1
100
0
54
0
0
0
100
0.00
46194--46222
3
9.7
3
100
0
58
68
0
0
31
0.89
56582--56607
2
13.0
2
100
0
52
50
0
0
50
1.00
61639--61673
17
2.0
18
94
5
63
28
8
11
51
1.67
62508--62546
11
3.5
11
78
0
51
25
25
28
20
1.99
63409--63433
2
12.5
2
100
0
50
52
0
0
48
1.00
65237--65530
91
3.3
91
84
3
355
28
17
24
29
1.97
65461--65600
70
2.0
70
88
0
208
26
14
23
35
1.93
68115--68164
14
3.6
14
89
2
66
14
50
0
36
1.43
68115--68154
18
2.2
19
90
4
64
17
50
0
32
1.47
68920--68978
31
1.9
31
89
0
91
28
16
5
49
1.67
69154--69241
44
2.0
45
86
2
124
19
32
13
34
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
70011--70035
2
12.5
2
100
0
50
52
0
0
48
1.00
71639--71672
2
17.0
2
93
0
59
50
2
0
47
1.16
71716--72160
245
1.9
237
87
6
661
35
11
10
43
1.75
72937--72976
18
2.2
18
100
0
80
25
35
10
30
1.88
73200--73244
23
2.0
23
86
8
65
22
13
11
53
1.71
78899--78941
16
2.7
16
100
0
86
25
20
20
32
1.97
91751--91830
42
1.9
41
87
2
115
42
16
11
30
1.83
92676--92702
6
4.5
6
100
0
54
48
0
14
37
1.45
97070--97116
3
15.3
3
86
4
67
2
36
0
61
1.08
97073--97114
22
1.9
22
95
0
75
2
38
0
59
1.10
97068--97116
25
2.0
25
95
0
89
4
36
0
59
1.17
99190--99249
29
2.1
29
93
0
102
50
8
15
26
1.72
103029--103117
44
2.0
44
100
0
178
34
20
11
33
1.88

Tables:   1

The End!