Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01015666.1 Corchorus capsularis cultivar CVL-1 contig15687, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2231
ACGTcount: A:0.33, C:0.20, G:0.14, T:0.33


Found at i:131 original size:32 final size:31

Alignment explanation


    Indices: 95--165  Score: 81
    Period size: 32  Copynumber: 2.2  Consensus size: 31

         85 ACTATGGCGC

                                             
         95 GGCGTTTGGATATTTAGACGCCACTAAATA-AG
          1 GGCGTTT-GATATTTAGACGCCACTAAA-AGAG

                     * *          *         
        127 GGCGTCTTGTTCTTTAGACGCCGCTAAAAGAG
          1 GGCGT-TTGATATTTAGACGCCACTAAAAGAG

                   
        159 GGCGTTT
          1 GGCGTTT

        166 TCTTTTCATG


Statistics
Matches: 34,  Mismatches: 3, Indels: 5
        0.81            0.07        0.12

Matches are distributed among these distances:
  31    3  0.09
  32   29  0.85
  33    2  0.06

ACGTcount: A:0.24, C:0.18, G:0.28, T:0.30


Consensus pattern (31 bp):   
GGCGTTTGATATTTAGACGCCACTAAAAGAG
Done.