Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015668.1 Corchorus capsularis cultivar CVL-1 contig15689, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85639

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4746--4799
1
54.0
1
92
0
72
92
1
0
5
0.44
4793--4832
3
13.7
3
94
5
73
70
30
0
0
0.88
6162--6201
20
2.0
20
85
0
53
67
2
0
30
1.04
6162--6205
15
3.0
14
83
9
52
63
2
0
34
1.07
6176--6205
15
2.1
15
93
6
53
63
0
0
36
0.95
10749--10794
3
15.3
3
100
0
92
67
0
0
32
0.91
10790--10821
4
8.0
4
100
0
64
75
0
0
25
0.81
21646--21696
19
2.7
18
80
14
50
64
3
31
0
1.11
34059--34502
162
2.7
162
79
3
561
15
18
21
44
1.87
34085--34592
243
2.1
243
96
0
926
17
19
20
42
1.89
34059--34594
81
6.6
81
79
4
481
16
19
20
42
1.89
34085--34675
243
2.4
243
89
3
726
17
20
19
41
1.91
45264--45294
2
15.5
2
100
0
62
0
0
48
51
1.00
45308--45338
10
3.1
10
100
0
62
19
9
19
51
1.74
53254--53300
5
9.4
5
100
0
94
40
0
0
59
0.97
54022--54100
41
2.0
40
85
7
106
27
11
22
37
1.89
54284--54507
91
2.5
91
85
2
299
31
19
12
36
1.89
65546--65675
69
1.9
69
85
3
181
41
16
13
28
1.86
68175--68214
19
2.1
19
95
0
71
35
17
22
25
1.95
74108--74221
55
2.0
56
88
8
169
50
10
10
28
1.69
76097--76138
21
2.0
21
95
0
75
40
9
16
33
1.81

Tables:   1

The End!