Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015669.1 Corchorus capsularis cultivar CVL-1 contig15690, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61374

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1829--1857
15
1.9
15
100
0
58
41
0
13
44
1.44
1830--1882
25
2.1
25
89
0
79
45
1
11
41
1.51
2747--2780
11
3.0
11
91
4
50
76
0
23
0
0.79
2746--2780
17
2.0
18
88
5
54
77
0
22
0
0.78
3089--3124
18
2.0
18
88
0
54
44
0
0
55
0.99
4564--4607
21
2.1
21
87
8
63
18
34
9
38
1.82
7078--7115
20
1.9
20
94
0
67
28
26
10
34
1.90
9730--9767
10
3.7
10
83
16
51
0
39
0
60
0.97
13965--14009
21
2.2
20
84
4
54
35
11
15
37
1.83
14232--14259
8
3.5
8
100
0
56
46
0
14
39
1.44
15166--15192
2
13.5
2
100
0
54
48
0
0
51
1.00
15425--15491
6
11.0
6
77
20
68
31
49
17
1
1.56
15392--15453
16
3.9
16
89
6
90
41
40
12
4
1.65
15425--15491
22
3.0
23
86
6
84
31
49
17
1
1.56
15441--15491
16
3.1
17
83
13
70
29
50
17
1
1.57
16235--16289
23
2.4
23
90
0
83
29
45
23
1
1.63
16237--16288
17
3.1
17
82
0
68
26
48
23
1
1.62
16278--16383
16
6.8
16
85
4
153
40
37
14
7
1.74
16278--16383
31
3.4
31
89
2
167
40
37
14
7
1.74
16235--16289
6
9.5
6
78
7
60
29
45
23
1
1.63
16278--16383
47
2.3
47
88
3
151
40
37
14
7
1.74
17485--17567
33
2.4
35
84
11
109
28
12
19
39
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
18458--18522
12
5.7
12
73
10
55
46
4
1
47
1.32
20645--20679
15
2.3
15
90
0
52
62
0
31
5
1.18
26391--26431
12
3.2
13
80
16
50
0
9
12
78
0.98
31487--31512
1
26.0
1
100
0
52
0
0
0
100
0.00
37163--37214
14
3.6
14
77
12
52
0
23
3
73
1.00
39560--39585
2
13.0
2
100
0
52
50
0
0
50
1.00
40793--40927
65
2.0
66
92
2
227
34
20
8
37
1.83
41262--41319
24
2.4
24
85
0
71
41
13
29
15
1.86
41261--41333
24
3.0
23
75
15
67
38
12
30
19
1.88
41983--42015
3
11.3
3
93
6
59
0
33
0
66
0.92
52846--52954
55
2.0
55
100
0
218
27
19
23
29
1.98
56357--56414
19
3.1
19
63
22
50
50
3
15
31
1.61
56338--56414
37
2.1
37
100
0
154
51
2
15
29
1.57
56339--56397
18
3.2
18
65
21
50
57
1
15
25
1.47
57809--57882
33
2.2
33
100
0
148
8
24
5
62
1.44
57975--58020
25
1.9
24
86
8
67
8
15
0
76
1.02
57910--58025
11
9.7
11
68
25
67
18
12
1
67
1.31
58367--58411
23
1.9
23
81
4
54
33
2
33
31
1.70
58040--58562
220
2.4
220
90
1
823
35
8
18
37
1.81
58642--59135
220
2.2
220
88
4
735
36
19
7
36
1.81
58984--59030
23
2.0
24
87
4
69
36
36
0
27
1.57
59180--59256
11
6.5
11
68
24
50
67
2
11
18
1.33
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
59285--59356
21
3.3
21
68
24
67
63
4
23
8
1.39
59306--59381
12
6.6
12
71
19
56
63
3
28
3
1.30
59284--59387
45
2.3
45
100
0
208
62
3
25
7
1.39
60225--60249
2
12.5
2
100
0
50
52
0
0
48
1.00

Tables:   1

The End!