Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015670.1 Corchorus capsularis cultivar CVL-1 contig15691, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24525

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1579--1616
19
2.0
20
94
5
69
50
7
10
31
1.66
3444--3472
6
4.8
6
100
0
58
51
0
13
34
1.42
5116--5437
166
1.9
167
83
3
416
39
16
13
30
1.87
5811--5900
45
2.0
45
88
0
135
25
20
16
37
1.93
5244--6023
324
2.4
314
88
4
1120
37
16
14
32
1.89
7037--7078
20
2.2
20
86
4
59
45
7
7
40
1.59
10715--10746
15
2.1
15
94
0
55
37
28
0
34
1.57
16366--16394
3
9.7
3
100
0
58
68
0
0
31
0.89
21424--21465
19
2.2
19
100
0
84
52
0
9
38
1.34
22223--22288
29
2.3
29
86
0
87
40
16
21
21
1.91
22839--22878
3
13.3
3
89
0
62
67
0
5
27
1.11

Tables:   1

The End!