Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015672.1 Corchorus capsularis cultivar CVL-1 contig15693, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50864

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47--114
26
2.6
26
84
9
93
33
1
8
55
1.40
71--114
15
3.2
15
72
24
51
36
0
9
54
1.32
123--182
25
2.5
25
86
5
79
43
0
20
36
1.52
253--296
21
2.1
21
83
8
54
40
9
36
13
1.76
1713--1771
30
2.0
29
83
6
75
54
0
3
42
1.17
1713--1774
31
2.0
30
84
3
79
54
0
3
41
1.16
1893--1950
2
28.5
2
85
3
80
48
0
6
44
1.29
4594--4626
11
3.1
11
82
8
50
36
24
21
18
1.95
8088--8113
11
2.4
11
100
0
52
57
15
19
7
1.62
9381--9406
12
2.2
12
100
0
52
7
15
15
61
1.55
17743--17826
31
2.7
31
85
5
109
29
26
9
34
1.88
19540--19573
18
1.9
18
88
5
52
52
0
38
8
1.33
21678--21840
83
2.0
82
92
1
272
48
11
14
26
1.76
22829--23907
543
2.0
545
95
1
1932
37
21
9
31
1.86
25090--25133
21
2.1
21
91
0
70
18
36
9
36
1.82
25482--25606
32
3.9
32
91
0
214
12
36
40
10
1.78
25588--25684
33
2.9
33
77
6
90
13
31
37
17
1.89
26903--26967
7
9.0
7
80
6
76
40
3
27
29
1.71
26903--26967
15
4.5
14
81
7
58
40
3
27
29
1.71
26903--26967
29
2.2
29
86
0
85
40
3
27
29
1.71
28276--28301
12
2.2
12
100
0
52
50
30
19
0
1.48
29698--29741
21
2.1
21
86
0
61
22
27
11
38
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29826--29938
32
3.5
32
85
6
138
10
40
36
12
1.78
31431--31463
2
16.5
2
100
0
66
51
0
0
48
1.00
31469--31562
47
2.0
48
95
2
172
22
15
20
41
1.90
32757--32798
3
14.0
3
100
0
84
33
0
0
66
0.92
34520--34576
27
2.1
27
100
0
114
40
21
19
19
1.92
37913--37960
3
15.7
3
95
4
87
64
0
0
35
0.94
39885--39916
14
2.3
14
94
0
55
65
0
0
34
0.93
40426--40461
2
18.0
2
100
0
72
50
0
0
50
1.00
41133--41189
28
2.0
28
100
0
114
38
19
7
35
1.79
43241--43270
3
10.0
3
100
0
60
66
0
0
33
0.92
46558--46890
163
2.0
163
98
0
648
38
15
21
23
1.92
49366--49399
14
2.4
14
95
0
59
23
11
14
50
1.76
49540--49578
20
2.0
20
85
10
53
28
7
23
41
1.82

Tables:   1

The End!