Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015678.1 Corchorus capsularis cultivar CVL-1 contig15699, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16597

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1879--2309
115
3.8
113
90
5
594
21
26
21
30
1.98
1879--2309
229
1.9
224
85
7
561
21
26
21
30
1.98
3239--3329
19
4.8
19
84
0
92
29
7
21
40
1.81
3228--3329
38
2.7
38
81
0
123
28
6
23
41
1.80
12365--12405
7
5.9
7
86
13
50
58
4
0
36
1.20
12346--12403
25
2.2
25
81
9
62
53
6
1
37
1.38
12473--12557
32
2.7
32
88
0
116
10
35
34
20
1.87
12593--12617
13
1.9
13
100
0
50
40
20
8
32
1.81
12867--12902
19
1.9
18
88
5
54
41
2
22
33
1.68
15929--15961
6
5.5
6
92
0
57
54
18
0
27
1.44
15958--15991
12
2.7
13
90
4
52
58
8
11
20
1.59

Tables:   1

The End!