Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015679.1 Corchorus capsularis cultivar CVL-1 contig15700, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45311

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2306--2368
21
3.0
21
70
23
60
12
28
50
7
1.68
6039--6065
6
4.5
6
100
0
54
55
14
0
29
1.40
11496--11573
32
2.4
32
93
0
129
17
35
23
23
1.95
20491--20516
2
13.0
2
100
0
52
50
0
0
50
1.00
24839--24892
6
9.8
6
75
16
55
3
18
51
25
1.62
24839--24882
22
2.0
23
95
4
81
4
18
50
27
1.66
24851--24892
16
2.6
16
92
0
66
4
19
52
23
1.65
24839--24892
22
2.5
22
85
14
76
3
18
51
25
1.62
25303--25360
31
1.9
29
82
6
71
41
24
10
24
1.86
27202--27227
11
2.4
11
100
0
52
42
15
7
34
1.75
31699--31976
107
2.6
110
85
6
311
24
22
9
43
1.83
31653--31955
146
2.1
143
85
4
403
23
22
9
44
1.81
31665--31976
35
8.8
35
80
9
305
24
21
9
44
1.82
31965--32009
11
4.2
11
94
5
83
8
26
8
55
1.60
31965--32009
21
2.1
22
95
4
83
8
26
8
55
1.60
32068--32228
35
4.5
36
87
6
247
27
13
11
47
1.77
32257--32398
36
3.9
36
84
6
171
27
13
10
48
1.75
32316--32419
36
2.9
36
91
4
140
26
13
11
48
1.77
32422--32633
74
2.9
72
84
6
225
25
20
8
45
1.79
32451--32673
34
6.3
36
83
8
271
26
19
9
45
1.80
32451--32673
108
2.1
104
88
5
322
26
19
9
45
1.80
32451--32673
74
3.1
69
86
7
254
26
19
9
45
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33446--33533
45
1.9
46
93
2
151
22
20
20
36
1.95
37505--37531
14
1.9
14
100
0
54
48
7
0
44
1.31
38825--39301
35
13.7
35
86
5
646
33
18
9
39
1.83
39809--39848
21
2.0
21
90
5
64
35
7
5
52
1.51
39853--39976
51
2.4
49
83
7
142
40
13
4
41
1.63
39856--40001
51
2.8
51
81
8
127
41
13
3
41
1.61
42587--42674
36
2.4
36
79
3
106
36
32
17
13
1.89
42773--42866
35
2.7
35
86
1
127
38
18
21
22
1.93
43110--43174
33
1.9
33
84
3
85
36
18
23
21
1.95
43108--43208
34
2.9
34
78
8
107
33
19
24
21
1.97
44387--44424
11
3.4
11
83
16
51
0
21
0
78
0.74
44387--44425
12
3.3
12
82
3
53
0
20
0
79
0.73
44500--44543
22
2.0
22
86
0
61
29
9
9
52
1.64
45191--45224
15
2.3
15
90
5
52
41
11
8
38
1.73

Tables:   1

The End!