Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01015682.1 Corchorus capsularis cultivar CVL-1 contig15703, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6407
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.34


Found at i:4403 original size:44 final size:44

Alignment explanation


    Indices: 4339--4463  Score: 156
    Period size: 44  Copynumber: 3.0  Consensus size: 44

       4329 CAAAAAGAAT

                           *                            
       4339 GTTTTTTTTAAGCAACTCCAAAAGAAGACTTTTGGAAAATAAAG
          1 GTTTTTTTTAAGCAAATCCAAAAGAAGACTTTTGGAAAATAAAG

                                                         
       4383 GTTTTTTGTT-AGCAAATCCAAAAGAAGACTTTTGGAAAATAAAG
          1 GTTTTTT-TTAAGCAAATCCAAAAGAAGACTTTTGGAAAATAAAG

                 *                *                    
       4427 G----CTTTAA--AATATCCAAGAGAAGACTTTTGGAAAATAA
          1 GTTTTTTTTAAGCAA-ATCCAAAAGAAGACTTTTGGAAAATAA

       4464 TAAAATTGGT


Statistics
Matches: 75,  Mismatches: 3, Indels: 11
        0.84            0.03        0.12

Matches are distributed among these distances:
  38    2  0.03
  39   28  0.37
  40    2  0.03
  44   41  0.55
  45    2  0.03

ACGTcount: A:0.42, C:0.10, G:0.17, T:0.30


Consensus pattern (44 bp):   
GTTTTTTTTAAGCAAATCCAAAAGAAGACTTTTGGAAAATAAAG
Done.