Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015686.1 Corchorus capsularis cultivar CVL-1 contig15707, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60621

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6160--6194
18
1.9
18
88
0
52
45
5
22
25
1.74
9304--9364
31
2.0
31
96
0
113
22
16
18
42
1.89
22144--22249
52
2.1
51
89
1
158
28
25
18
27
1.98
35506--35549
22
2.0
22
100
0
88
31
9
40
18
1.81
43655--43697
7
5.9
7
83
5
50
83
2
2
11
0.83
44141--44479
50
6.9
49
82
3
358
22
29
15
31
1.95
48453--48571
36
3.4
35
79
13
147
28
17
6
47
1.73
48474--48581
32
3.2
32
78
14
128
28
16
6
48
1.71
48453--48581
68
1.9
68
90
3
206
28
17
6
48
1.71
48610--48938
36
8.9
36
86
5
433
23
23
9
43
1.82
48932--49157
11
20.5
11
76
5
152
24
19
8
46
1.78
48974--49159
11
17.0
11
78
3
178
27
18
8
45
1.78
49301--49435
42
3.3
42
89
5
197
25
20
11
42
1.85
49563--49592
15
2.1
14
93
6
51
16
26
10
46
1.78
50640--50704
35
1.9
33
84
12
87
15
26
4
53
1.61
52283--52345
22
2.8
22
87
2
90
28
28
19
23
1.98
52342--52409
22
3.2
21
79
12
77
22
16
27
33
1.95
54093--54187
19
4.8
19
77
19
97
1
17
1
80
0.84
54095--54187
7
13.4
7
80
17
90
1
18
1
79
0.85
54120--54187
6
10.5
6
85
14
75
1
16
0
82
0.75
54094--54181
23
3.7
24
73
18
69
1
18
1
79
0.86
57517--57552
19
1.9
18
88
5
54
41
2
22
33
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
58836--58869
16
2.2
16
89
5
52
29
2
8
58
1.43
60038--60072
13
2.7
13
95
0
61
60
8
11
20
1.57

Tables:   1

The End!