Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001569.1 Corchorus capsularis cultivar CVL-1 contig01569, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 603

Length: 1005
ACGTcount: A:0.40, C:0.12, G:0.13, T:0.35


Found at i:110 original size:21 final size:21

Alignment explanation


    Indices: 80--121  Score: 75
    Period size: 21  Copynumber: 2.0  Consensus size: 21

         70 AATTAACTCT

                 *               
         80 AATATTATCTAATATAATAAG
          1 AATATAATCTAATATAATAAG

                                 
        101 AATATAATCTAATATAATAAG
          1 AATATAATCTAATATAATAAG

        122 TTATCATTCT


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  21   20  1.00

ACGTcount: A:0.55, C:0.05, G:0.05, T:0.36


Consensus pattern (21 bp):   
AATATAATCTAATATAATAAG
Done.