Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01015693.1 Corchorus capsularis cultivar CVL-1 contig15714, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6769
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33


Found at i:724 original size:26 final size:26

Alignment explanation


    Indices: 665--714  Score: 73
    Period size: 26  Copynumber: 1.9  Consensus size: 26

        655 TTAAATCTGT

                                   * *
        665 CAATAAAATTATTATTTGATTTTTTG
          1 CAATAAAATTATTATTTGATTTTATA

               *                    
        691 CAACAAAATTATTATTTGATTTTA
          1 CAATAAAATTATTATTTGATTTTA

        715 ATACTTAAAA


Statistics
Matches: 22,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  26   22  1.00

ACGTcount: A:0.38, C:0.06, G:0.06, T:0.50


Consensus pattern (26 bp):   
CAATAAAATTATTATTTGATTTTATA

Found at i:4547 original size:17 final size:16

Alignment explanation


    Indices: 4508--4548  Score: 55
    Period size: 17  Copynumber: 2.5  Consensus size: 16

       4498 AGAGAAGATC

                            
       4508 TCTTTTTATTTTCTTT
          1 TCTTTTTATTTTCTTT

                         *   
       4524 TCTTTTTCATTTTGTTT
          1 TCTTTTT-ATTTTCTTT

             *      
       4541 TTTTTTTA
          1 TCTTTTTA

       4549 CTTAAATGCC


Statistics
Matches: 22,  Mismatches: 2, Indels: 2
        0.85            0.08        0.08

Matches are distributed among these distances:
  16    8  0.36
  17   14  0.64

ACGTcount: A:0.07, C:0.10, G:0.02, T:0.80


Consensus pattern (16 bp):   
TCTTTTTATTTTCTTT
Done.