Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015694.1 Corchorus capsularis cultivar CVL-1 contig15715, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53692

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
21687--21727
13
3.2
13
100
0
82
51
7
7
34
1.58
21898--21947
25
2.0
25
100
0
100
40
0
20
40
1.52
22567--22801
106
2.2
107
87
0
337
43
8
8
39
1.67
23624--23685
23
2.7
23
80
7
65
67
0
6
25
1.14
31651--31682
2
16.0
2
100
0
64
50
0
0
50
1.00
31953--32042
31
3.0
30
76
15
89
36
16
26
20
1.93
34971--35026
28
2.0
28
93
3
96
39
17
8
33
1.81
35631--35671
18
2.3
18
87
8
57
36
7
4
51
1.51
37041--37121
29
2.7
29
80
14
94
22
24
18
34
1.96
42542--42625
36
2.3
37
85
4
107
8
14
16
60
1.57
44164--44221
30
1.9
30
92
0
98
50
20
10
18
1.76
47889--47933
22
2.0
22
100
0
90
31
4
37
26
1.76
48966--48991
13
2.0
13
100
0
52
30
7
7
53
1.57
52753--52793
20
2.0
20
85
0
55
26
14
21
36
1.93
53652--53692
2
20.0
2
90
5
64
46
4
0
48
1.23

Tables:   1

The End!