genome.fa.s15695.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015695.1 Corchorus capsularis cultivar CVL-1 contig15716, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  32529

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
157--229	38	1.9	38	88	0	110	42	8	15	34	1.76
136--252	60	1.9	61	82	1	146	41	7	14	35	1.75
117--645	22	24.3	22	68	10	154	40	9	15	34	1.80
538--689	62	2.5	62	93	0	259	43	8	13	34	1.75
859--902	22	2.0	22	82	8	54	40	9	4	45	1.56
1137--1196	22	2.7	22	82	5	77	38	10	13	38	1.78
1180--1214	18	1.9	18	88	0	52	42	8	11	37	1.72
1163--1312	60	2.4	63	78	10	150	36	14	8	40	1.77
1161--1432	22	12.8	22	70	14	135	35	14	9	40	1.78
1415--1465	19	2.6	20	90	6	86	25	17	11	45	1.83
1573--1624	22	2.4	22	87	3	79	38	11	5	44	1.65
1635--1693	22	2.7	21	80	12	66	35	13	10	40	1.78
1635--1714	22	3.7	21	78	9	65	38	12	8	40	1.74
1815--1865	22	2.3	22	82	0	66	41	19	7	31	1.80
1870--1929	22	2.7	22	78	14	61	40	15	10	35	1.80
1972--2104	22	6.0	22	76	10	108	38	18	9	34	1.82
2271--2308	19	2.0	20	85	15	53	63	2	5	28	1.30
2432--2506	38	2.1	36	87	7	107	58	9	17	14	1.62
2923--3007	22	3.9	22	75	9	84	38	14	10	36	1.80
3174--3211	19	2.0	20	85	15	53	63	2	5	28	1.30
3899--3943	18	2.4	18	88	7	63	53	6	0	40	1.27
3897--3943	20	2.5	19	86	6	69	51	6	0	42	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5918--5969	25	2.1	25	92	0	86	28	21	11	38	1.88
22566--22652	45	1.9	45	95	0	156	24	20	20	34	1.97
23423--23598	91	1.9	89	87	5	255	26	21	15	36	1.93
25644--25694	25	2.0	25	88	0	75	21	9	13	54	1.67
27289--27313	13	1.9	13	100	0	50	44	16	40	0	1.47
28188--28261	29	2.5	29	88	4	94	37	1	18	41	1.59
28205--28262	29	2.0	29	96	0	107	36	0	18	44	1.50
28840--29140	35	9.1	35	78	13	307	38	7	18	34	1.79
28840--29334	66	7.6	66	76	12	486	38	8	18	35	1.81
28857--29334	31	14.7	31	75	13	335	38	8	18	35	1.80
29155--29353	35	5.8	35	82	4	235	38	8	16	37	1.78
29249--29302	14	3.6	14	74	13	54	33	9	22	35	1.86

Tables:   1

The End!