genome.fa.s15697.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015697.1 Corchorus capsularis cultivar CVL-1 contig15718, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  104199

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2492--2558	26	2.6	26	97	0	125	28	5	13	52	1.64
8257--8483	22	10.3	22	65	10	68	35	13	12	39	1.82
18368--18393	11	2.4	11	100	0	52	7	0	23	69	1.14
22043--22069	13	2.1	13	100	0	54	40	14	14	29	1.86
23734--23810	29	2.6	30	74	14	88	16	12	29	40	1.86
32878--32906	12	2.4	12	100	0	58	44	20	0	34	1.52
33642--33686	21	2.1	21	91	0	72	17	31	11	40	1.85
33892--33976	32	2.6	32	83	12	102	9	36	41	12	1.76
34033--34102	31	2.2	32	82	10	90	12	45	34	7	1.70
35236--35278	20	2.2	20	100	0	86	30	4	23	41	1.74
45390--45482	46	2.0	46	93	2	161	37	11	13	36	1.82
55444--55490	22	2.1	22	88	7	69	63	2	10	23	1.37
60623--60742	59	2.0	59	100	0	240	39	10	13	37	1.78
63126--63152	6	4.5	6	100	0	54	29	0	14	55	1.40
67292--67350	23	2.6	23	86	0	82	15	13	32	38	1.86
67319--67364	23	2.0	23	86	0	65	17	17	32	32	1.93
75587--75643	28	2.0	28	93	6	98	26	21	14	38	1.91
82244--82392	37	4.1	37	87	3	221	26	25	10	37	1.88
82637--82695	18	3.2	18	65	21	50	30	23	5	40	1.76
82380--82720	37	9.4	37	86	5	428	26	26	7	39	1.83
82954--82992	18	2.2	18	85	0	51	33	17	7	41	1.79
82917--83029	55	2.1	55	86	0	154	27	20	9	42	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82972--83154	37	4.9	37	75	3	161	27	20	10	41	1.85
82860--83104	129	1.9	129	88	1	375	25	21	11	41	1.86
82972--83154	75	2.5	74	88	0	267	27	20	10	41	1.85
83124--83298	41	4.2	41	90	0	242	26	19	10	43	1.83
83493--83723	55	4.2	55	82	6	270	35	19	19	25	1.95
84914--85395	71	6.8	71	94	0	820	25	22	8	43	1.82
93584--93841	107	2.5	105	89	2	385	42	8	7	41	1.63
95137--95183	23	2.0	23	100	0	94	17	25	19	38	1.92
102850--102882	2	16.5	2	100	0	66	48	0	0	51	1.00

Tables:   1

The End!