Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015702.1 Corchorus capsularis cultivar CVL-1 contig15723, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27376

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3389--3449
30
2.0
30
100
0
122
29
6
22
40
1.79
6860--6940
25
3.2
25
76
0
72
17
16
19
46
1.84
7631--7817
38
4.9
38
83
1
230
33
14
16
35
1.89
11057--11297
87
2.8
87
86
4
301
24
28
25
20
1.99
11694--11718
10
2.5
10
100
0
50
40
24
8
28
1.83
13132--13378
54
4.7
54
79
10
239
24
27
24
23
2.00
13354--13448
38
2.5
38
89
1
138
27
24
30
17
1.97
13414--13614
54
3.7
54
84
2
253
23
28
23
23
1.99
13414--13613
108
1.9
107
91
1
328
23
29
24
23
1.99
13699--14003
76
4.0
76
92
0
466
20
23
31
24
1.98
15360--15567
76
2.8
75
89
3
294
22
34
28
14
1.93
18704--18746
22
2.0
21
86
4
59
60
25
0
13
1.34
20571--20611
15
2.8
14
85
10
55
82
0
9
7
0.83
20683--20721
14
2.8
14
84
11
53
46
7
12
33
1.71
22966--22991
2
13.0
2
100
0
52
50
0
0
50
1.00
24622--24654
16
2.1
16
94
0
57
45
33
9
12
1.73
24074--24918
421
2.0
423
84
4
1107
35
21
13
28
1.92
24888--25127
134
1.8
130
84
3
327
51
2
10
36
1.47
26250--26285
2
18.0
2
100
0
72
50
0
0
50
1.00

Tables:   1

The End!