Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015708.1 Corchorus capsularis cultivar CVL-1 contig15729, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46643

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5955--6029
30
2.5
30
84
4
98
26
30
30
12
1.92
6916--7034
33
3.6
33
91
0
184
31
9
16
42
1.80
8633--8693
30
2.0
30
87
0
86
37
18
26
18
1.93
20822--20875
21
2.6
21
75
13
58
68
5
7
18
1.33
24398--24446
23
2.1
23
92
0
80
34
6
10
48
1.62
27206--27861
49
13.4
49
86
2
788
24
32
12
30
1.92
27203--27860
98
6.7
98
87
0
879
23
32
12
31
1.92
27203--27861
147
4.5
147
87
0
890
23
32
12
31
1.92
28819--28920
51
2.0
51
98
0
195
20
21
14
43
1.88
30722--30781
19
3.0
20
78
11
61
63
6
13
16
1.50
30739--30787
21
2.4
21
77
16
57
65
6
10
18
1.43
33332--33376
22
2.0
22
86
0
63
24
22
24
28
1.99
35620--35674
21
2.6
21
81
16
60
1
41
3
52
1.29
39344--39529
76
2.5
76
92
3
308
20
16
16
46
1.83
41514--41546
3
11.7
3
87
12
52
36
0
0
63
0.95
46047--46122
16
4.8
16
79
6
91
40
38
14
6
1.72

Tables:   1

The End!