Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015714.1 Corchorus capsularis cultivar CVL-1 contig15735, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63642

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--68
2
34.0
2
100
0
136
0
50
0
50
1.00
2875--2909
6
5.8
6
96
0
61
68
11
0
20
1.20
5507--5541
2
17.5
2
100
0
70
48
0
51
0
1.00
8022--8049
12
2.3
12
100
0
56
57
0
0
42
0.99
8013--8051
13
3.0
13
85
11
53
53
2
0
43
1.14
10494--10592
33
3.0
33
92
0
162
31
21
20
27
1.98
11398--11488
43
2.1
43
95
0
164
40
10
16
31
1.83
11997--12171
35
5.0
35
86
0
224
36
15
21
27
1.93
11997--12160
70
2.3
70
97
0
310
36
15
20
26
1.93
12407--12563
83
1.9
82
94
1
278
27
14
18
39
1.90
16936--16964
12
2.3
13
94
5
51
37
44
0
17
1.49
17071--17100
11
2.7
11
94
0
51
3
90
0
6
0.56
22151--22192
22
1.9
22
85
9
59
7
23
2
66
1.28
22156--22188
18
1.9
18
88
11
52
6
27
3
63
1.32
23700--24074
187
2.0
187
96
0
696
21
28
9
40
1.85
27677--27737
1
61.0
1
73
0
50
86
3
3
6
0.76
27677--27713
8
4.6
8
90
9
58
89
0
0
10
0.49
27683--27737
9
6.2
9
85
10
60
87
3
3
5
0.75
27677--27737
17
3.6
16
82
12
68
86
3
3
6
0.76
27677--27738
21
2.8
22
82
7
63
85
4
3
6
0.82
30847--30896
21
2.4
20
83
6
55
22
10
4
64
1.41
31814--32498
217
3.2
217
89
4
1064
36
20
7
36
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39532--39570
19
2.1
19
85
0
51
48
12
7
30
1.69
45279--45500
108
2.1
108
97
0
417
37
20
13
28
1.91
47794--47965
68
2.5
68
88
1
247
37
12
16
33
1.86
51422--51454
16
2.0
17
88
5
50
3
15
45
36
1.61
51655--51781
42
3.0
42
89
4
202
37
4
17
40
1.71
52320--52362
16
2.7
16
75
10
52
16
23
27
32
1.96
53062--53124
30
2.1
30
87
0
90
36
15
4
42
1.69
54517--54582
30
2.2
30
97
2
125
22
27
4
45
1.72
55140--55282
71
2.0
71
97
0
268
39
17
11
32
1.85
56275--56305
2
15.5
2
100
0
62
51
0
0
48
1.00
57650--57820
82
2.0
87
84
7
228
37
11
8
42
1.71
57970--58010
20
2.0
20
90
0
64
19
41
7
31
1.79
57978--58016
20
1.9
20
89
5
60
17
43
10
28
1.82
58359--58488
33
3.9
33
79
11
149
13
35
34
16
1.88

Tables:   1

The End!