Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015716.1 Corchorus capsularis cultivar CVL-1 contig15737, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28761

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
155--472
166
1.9
165
83
5
417
43
10
12
33
1.76
584--915
140
2.4
139
91
3
515
43
9
9
38
1.69
3319--3366
22
2.1
23
84
3
62
16
16
20
45
1.85
5129--5156
1
28.0
1
100
0
56
100
0
0
0
0.00
14052--14087
19
1.9
19
88
5
56
66
0
0
33
0.92
14579--14906
178
1.8
178
84
2
444
31
14
16
37
1.89
15650--15705
21
2.6
22
82
5
69
25
0
32
42
1.55
15809--15852
21
2.1
21
86
0
61
18
34
9
38
1.82
16096--16137
20
2.2
20
91
8
70
38
0
0
61
0.96
16143--16276
32
4.2
32
89
2
218
14
38
38
8
1.78
16143--16276
62
2.1
62
91
5
216
14
38
38
8
1.78
16260--16291
15
2.1
15
94
0
55
12
40
37
9
1.75
16228--16323
47
2.0
47
89
0
147
15
35
37
11
1.84
21412--21462
21
2.4
21
90
0
84
11
21
33
33
1.90
28268--28371
27
3.7
27
72
18
97
18
11
23
47
1.81
28268--28381
28
4.1
28
82
8
135
19
11
23
45
1.82

Tables:   1

The End!