genome.fa.s15720.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015720.1 Corchorus capsularis cultivar CVL-1 contig15741, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30581

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4383--4784	49	8.2	49	86	1	554	23	30	13	31	1.94
6315--6371	25	2.4	24	75	21	57	59	1	36	1	1.18
11153--11213	29	2.1	29	100	0	122	13	36	13	37	1.83
12882--12914	2	16.5	2	93	0	57	48	0	3	48	1.17
14808--14874	29	2.5	26	85	7	89	22	20	4	52	1.65
14809--14874	26	2.4	30	85	12	88	22	21	4	51	1.66
14876--14995	27	4.4	26	74	14	100	21	23	2	52	1.59
14808--14946	74	1.9	74	82	7	176	23	21	3	51	1.64
14920--15138	65	3.3	65	89	2	305	18	22	2	56	1.54
14980--15038	27	2.1	29	90	9	97	18	20	3	57	1.54
14943--15155	37	6.2	36	70	26	126	16	23	2	56	1.54
14987--15060	28	2.7	28	85	6	80	18	21	2	56	1.54
15047--15117	27	2.6	28	86	8	103	16	23	2	56	1.54
15072--15155	39	2.2	36	83	8	105	14	25	2	58	1.48
15271--15490	22	10.4	20	72	16	119	22	20	4	52	1.64
15287--15468	20	8.8	19	74	16	82	22	19	4	53	1.63
15387--15444	29	2.1	27	83	6	71	18	17	3	60	1.50
16561--16698	51	2.7	51	92	2	224	39	18	5	36	1.75
17439--17480	19	2.2	20	82	4	50	28	28	2	40	1.69
17916--17948	16	2.1	16	94	0	57	0	21	15	63	1.30
18688--18899	50	4.2	50	84	1	271	26	24	11	37	1.89
18689--18897	101	2.1	100	85	5	287	26	24	11	37	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25491--25680	38	4.8	38	68	10	137	42	24	8	24	1.82
25619--25679	20	3.2	20	74	9	72	42	22	8	26	1.81
25617--25673	18	3.0	20	74	10	64	40	26	8	24	1.84
29324--29390	29	2.5	26	85	7	89	22	20	4	52	1.65
29325--29390	26	2.4	30	85	12	88	22	21	4	51	1.66
29324--29462	74	1.9	73	82	7	174	23	23	3	50	1.65
29392--29511	27	4.4	27	75	12	111	20	24	2	52	1.59
29438--29654	65	3.3	65	88	3	303	17	23	2	56	1.53
29499--29545	13	3.5	13	72	16	51	10	25	2	61	1.39
29459--29548	37	2.4	37	80	14	105	15	24	2	57	1.49
29496--29619	27	4.1	27	78	21	140	16	23	3	56	1.55
29523--29671	37	4.2	37	71	22	115	16	24	2	56	1.53
29563--29633	27	2.6	28	86	8	94	16	23	2	56	1.54
29588--29671	39	2.2	36	83	8	105	14	25	2	58	1.48
29785--30026	22	11.4	20	76	16	156	21	21	4	52	1.64
29901--29958	7	8.3	7	77	7	55	17	18	3	60	1.50
29901--29958	29	2.1	27	87	6	80	17	18	3	60	1.50
29785--30021	127	1.9	127	96	1	440	21	21	4	52	1.63

Tables:   1

The End!