Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01015730.1 Corchorus capsularis cultivar CVL-1 contig15751, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 17672
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.31


Found at i:6524 original size:23 final size:22

Alignment explanation


    Indices: 6475--6536  Score: 81
    Period size: 21  Copynumber: 2.8  Consensus size: 22

       6465 ATTTTTATAG

                    *     *       
       6475 CTATTTTTCTATGTTTTTTTAC
          1 CTATTTTTATATGTATTTTTAC

                                   
       6497 C-ATTTTTATATGTATTTTTACC
          1 CTATTTTTATATGTATTTTTA-C

                       *      
       6519 CTATTTTTATAAGTATTT
          1 CTATTTTTATATGTATTT

       6537 GTGTTTTTAG


Statistics
Matches: 35,  Mismatches: 3, Indels: 3
        0.85            0.07        0.07

Matches are distributed among these distances:
  21   17  0.49
  22    3  0.09
  23   15  0.43

ACGTcount: A:0.21, C:0.11, G:0.05, T:0.63


Consensus pattern (22 bp):   
CTATTTTTATATGTATTTTTAC

Found at i:6695 original size:19 final size:18

Alignment explanation


    Indices: 6671--6707  Score: 56
    Period size: 19  Copynumber: 2.0  Consensus size: 18

       6661 GAAGTTCGTG

                               
       6671 TTTGAAGATAATTTGAAGA
          1 TTTGAAGATAA-TTGAAGA

                     *        
       6690 TTTGAAGATCATTGAAGA
          1 TTTGAAGATAATTGAAGA

       6708 ATTATTTCAA


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  18    7  0.41
  19   10  0.59

ACGTcount: A:0.41, C:0.03, G:0.22, T:0.35


Consensus pattern (18 bp):   
TTTGAAGATAATTGAAGA
Done.