Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01015734.1 Corchorus capsularis cultivar CVL-1 contig15755, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8351
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.33


Found at i:2059 original size:30 final size:30

Alignment explanation


    Indices: 2018--2082  Score: 87
    Period size: 30  Copynumber: 2.2  Consensus size: 30

       2008 AAGGATCCAT

                *                          
       2018 TGGCTGGTTGT-GCGCGGATGCCCCATGCGA
          1 TGGCAGGTTGTGGC-CGGATGCCCCATGCGA

                             *   *        
       2048 TGGCAGGTTGTGGCCGGTTGCTCCATGCGA
          1 TGGCAGGTTGTGGCCGGATGCCCCATGCGA

                 
       2078 TGGCA
          1 TGGCA

       2083 CATGCGATGG


Statistics
Matches: 31,  Mismatches: 3, Indels: 2
        0.86            0.08        0.06

Matches are distributed among these distances:
  30   29  0.94
  31    2  0.06

ACGTcount: A:0.11, C:0.25, G:0.40, T:0.25


Consensus pattern (30 bp):   
TGGCAGGTTGTGGCCGGATGCCCCATGCGA
Done.