Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015737.1 Corchorus capsularis cultivar CVL-1 contig15758, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60782

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
263--423
32
5.3
30
81
6
157
12
26
28
32
1.93
2946--3010
23
2.9
22
79
4
67
40
15
12
32
1.84
2940--3041
22
4.6
22
73
4
71
41
17
10
30
1.84
3049--3117
22
3.1
22
87
0
93
36
14
11
37
1.83
3079--3185
23
4.7
22
75
13
76
36
14
10
39
1.80
3063--3329
22
12.4
21
70
13
136
35
14
9
40
1.79
3547--3602
21
2.7
21
100
0
112
39
8
5
46
1.58
3475--3680
22
9.5
22
74
12
126
36
13
8
41
1.75
3542--3663
21
5.6
20
76
16
77
36
13
8
42
1.74
3547--3806
22
11.7
22
70
18
107
36
16
8
38
1.79
3914--3962
22
2.2
22
96
0
89
32
20
14
32
1.92
3964--4015
22
2.4
22
90
0
77
46
15
3
34
1.64
4180--4217
19
2.0
20
85
15
53
63
2
5
28
1.30
4231--4573
167
2.0
174
85
6
468
42
9
10
37
1.71
5987--6050
31
2.1
31
88
2
94
48
3
20
28
1.64
8325--8390
31
2.1
32
83
8
82
46
4
16
31
1.67
16839--17355
254
2.0
255
94
1
905
35
10
8
45
1.69
26736--26792
24
2.4
24
90
0
78
38
24
10
26
1.88
26746--26806
24
2.5
24
89
5
88
47
19
13
19
1.82
27863--27899
17
2.2
17
90
0
56
62
5
32
0
1.18
28568--28638
33
2.2
33
92
0
115
16
35
38
9
1.82
30803--30850
24
2.0
24
100
0
96
41
20
0
37
1.53
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30806--30857
24
2.2
24
92
0
86
40
19
1
38
1.63
31169--31199
16
1.9
16
100
0
62
45
0
0
54
0.99
35182--35281
15
6.5
14
68
25
60
55
0
3
42
1.15
35210--35314
2
57.5
2
65
23
54
50
0
0
47
1.14
35210--35265
15
3.4
18
72
25
61
50
0
0
50
1.00
35209--35314
9
11.9
9
70
20
71
50
0
0
47
1.13
35228--35346
13
9.8
13
68
23
64
52
2
1
42
1.24
36441--36484
23
1.9
23
81
9
54
68
0
6
25
1.14
46007--46056
25
2.0
26
96
4
93
36
24
24
16
1.94
60032--60065
1
34.0
1
100
0
68
0
0
0
100
0.00

Tables:   1

The End!