Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015738.1 Corchorus capsularis cultivar CVL-1 contig15759, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67020

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
65--90
2
13.0
2
100
0
52
50
0
0
50
1.00
15704--15925
93
2.4
93
96
0
401
38
25
4
31
1.77
19907--19975
16
4.3
16
83
3
77
8
26
36
28
1.86
19830--19975
32
4.6
32
75
7
120
9
19
35
34
1.85
20423--20470
21
2.3
21
88
0
78
56
6
8
29
1.53
20578--20625
9
5.8
9
72
18
50
8
12
37
41
1.73
20617--20689
32
2.3
32
87
0
101
12
20
34
32
1.90
20575--20695
16
7.6
16
74
14
79
10
18
36
34
1.85
20749--20801
26
2.0
27
88
3
81
20
11
39
28
1.87
31820--31875
24
2.3
24
100
0
112
42
7
3
46
1.48
38369--38397
12
2.4
12
100
0
58
48
10
13
27
1.75
38766--38828
26
2.4
26
84
5
74
41
15
15
26
1.88
40513--40554
15
2.8
15
79
13
50
35
19
4
40
1.72
42106--42194
44
2.0
44
97
0
169
48
16
10
24
1.77
42686--42718
7
4.7
7
96
0
57
33
0
24
42
1.55
47407--47475
30
2.3
30
85
9
88
36
13
17
33
1.88
52810--52851
16
2.6
16
81
7
50
47
0
9
42
1.36
53015--53049
18
1.9
18
88
11
54
31
0
0
68
0.90
56985--57049
27
2.4
27
94
2
112
6
27
7
58
1.50
57069--57115
24
1.9
25
95
4
87
51
10
10
27
1.70
58718--58959
122
2.0
122
91
0
394
41
9
17
31
1.80
60751--60775
2
12.5
2
100
0
50
52
0
0
48
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64605--64650
21
2.2
21
100
0
92
32
17
10
39
1.84
64928--64973
3
15.3
3
90
0
74
67
0
4
28
1.10
66329--66379
20
2.5
20
96
3
93
27
7
15
49
1.72
66329--66395
20
3.3
20
89
6
82
25
10
14
49
1.76

Tables:   1

The End!