Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015739.1 Corchorus capsularis cultivar CVL-1 contig15760, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87330

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13067--13108
15
2.9
15
89
3
68
33
0
0
66
0.92
14926--14950
7
3.6
7
100
0
50
40
28
0
32
1.57
21758--21886
25
5.2
25
80
5
127
24
21
24
28
1.99
21765--21886
50
2.4
50
90
0
190
23
21
25
29
1.99
24644--24678
18
2.0
17
94
5
61
48
0
5
45
1.26
28056--28110
29
1.9
28
96
3
101
58
14
3
23
1.52
29686--29756
31
2.4
29
83
9
81
29
19
15
35
1.93
41227--41282
28
2.0
28
82
0
67
33
12
5
48
1.64
42568--42606
17
2.3
18
86
8
55
30
7
7
53
1.57
46868--46895
6
4.7
6
100
0
56
0
14
0
85
0.59
64753--64789
2
18.5
2
100
0
74
51
0
0
48
1.00
68695--68871
73
2.4
73
89
0
264
33
18
18
28
1.95
73861--74037
73
2.4
73
94
0
300
33
19
19
28
1.96
83421--83445
10
2.5
10
100
0
50
48
20
8
24
1.76
84347--84380
13
2.8
12
86
8
50
17
5
8
67
1.37
84860--84885
11
2.4
11
100
0
52
46
0
26
26
1.53
86900--87272
49
7.6
48
84
5
439
28
16
31
23
1.96
86900--87272
97
3.8
97
84
4
475
28
16
31
23
1.96
86951--87272
146
2.2
146
85
7
422
28
16
31
22
1.96

Tables:   1

The End!