Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015753.1 Corchorus capsularis cultivar CVL-1 contig15774, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28742

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
891--964
29
2.5
29
89
6
114
17
22
17
41
1.89
891--976
29
3.0
27
78
10
82
20
25
15
38
1.92
1133--1213
29
2.8
29
75
1
99
39
16
24
19
1.91
4395--4610
107
2.0
107
97
1
407
32
18
21
27
1.97
15841--16194
156
2.3
155
80
5
374
33
18
16
31
1.93
16794--16846
27
2.0
27
100
0
106
32
15
15
37
1.88
17535--17594
27
2.3
27
94
2
104
46
11
3
38
1.57
20359--20411
2
26.5
2
96
0
70
41
0
7
50
1.30
21226--21259
2
17.0
2
100
0
68
50
0
50
0
1.00
23141--23218
31
2.5
31
89
4
122
37
14
8
39
1.77
23309--23389
27
3.0
27
83
10
112
38
0
0
61
0.96
24659--24951
22
13.1
22
70
13
129
35
9
15
39
1.80
24961--25008
22
2.2
22
85
7
62
35
10
12
41
1.77
25228--25290
32
2.0
32
96
0
117
17
9
33
39
1.82
25231--25303
32
2.3
32
90
0
110
16
9
34
39
1.81
27478--27533
16
3.4
16
78
4
67
53
26
10
8
1.65
27689--27748
15
3.9
15
76
8
66
38
36
6
18
1.77
27686--27757
32
2.3
31
85
2
99
38
37
8
15
1.77

Tables:   1

The End!