genome.fa.s15754.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015754.1 Corchorus capsularis cultivar CVL-1 contig15775, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26416

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3196--3259	26	2.5	26	82	10	85	31	1	12	54	1.47
3216--3259	15	3.2	15	72	24	51	36	0	9	54	1.32
3268--3327	25	2.5	25	89	5	88	43	0	21	35	1.53
3469--3758	113	2.6	113	92	0	472	33	19	20	25	1.97
3804--3881	32	2.5	33	83	6	90	30	21	24	23	1.99
5585--5662	27	2.9	27	90	0	111	16	19	21	42	1.89
7053--7172	61	1.9	63	91	3	199	40	25	10	23	1.85
9379--9660	38	7.3	38	82	6	223	50	7	17	25	1.71
9377--9638	76	3.4	76	88	2	346	49	6	17	25	1.71
9510--9569	19	3.2	19	64	17	52	46	8	18	26	1.77
9379--9676	114	2.6	113	82	7	345	49	7	17	25	1.72
9585--9662	41	1.9	41	89	5	122	52	6	16	24	1.67
9787--9826	14	2.9	15	82	14	50	55	2	20	22	1.56
9827--9864	20	1.9	20	94	0	67	63	0	18	18	1.32
9775--9878	50	2.1	50	83	3	129	59	0	19	20	1.43
9815--9892	22	3.7	21	79	10	79	60	1	19	19	1.44
9913--10016	36	2.9	37	91	2	167	51	7	18	22	1.71
9961--9995	15	2.3	15	90	9	54	54	5	17	22	1.64
9976--10037	21	3.0	21	74	9	63	50	6	22	20	1.71
10033--10088	28	2.0	28	83	13	71	51	7	19	21	1.70
10142--10188	13	3.5	13	72	16	51	61	0	25	12	1.31
11466--11550	24	3.5	24	91	0	134	28	27	22	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21613--21648	18	2.0	18	100	0	72	55	11	0	33	1.35
25237--25314	40	2.0	40	84	5	104	34	12	12	39	1.82

Tables:   1

The End!