Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015755.1 Corchorus capsularis cultivar CVL-1 contig15776, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53725

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--33
2
17.0
2
93
6
59
48
0
0
51
1.00
1483--1560
16
4.9
16
84
10
97
48
33
11
6
1.65
8765--8807
11
3.9
11
90
0
68
46
6
4
41
1.51
8761--8807
22
2.1
22
96
0
85
46
6
4
42
1.48
13623--13680
29
2.0
29
100
0
116
55
13
6
24
1.63
18194--18257
31
2.1
31
85
8
87
25
12
4
57
1.54
20574--20611
19
2.0
19
89
0
58
57
5
2
34
1.35
20612--20752
52
2.7
52
95
0
264
36
10
9
42
1.73
22533--22621
6
14.7
6
75
17
78
0
19
0
80
0.70
22530--22624
14
6.6
14
75
22
83
0
20
0
80
0.72
22531--22613
25
3.4
24
87
9
116
0
18
0
81
0.68
22534--22624
42
2.2
42
88
7
132
0
19
0
80
0.72
22533--22621
12
7.3
13
77
20
95
0
19
0
80
0.70
23840--23871
16
1.9
17
93
6
57
28
0
0
71
0.86
25831--25861
15
2.1
15
100
0
62
35
0
19
45
1.51
29208--29247
3
13.3
3
89
0
53
65
5
0
30
1.14
29973--30045
3
24.0
3
84
8
58
54
0
1
43
1.08
29987--30066
35
2.2
37
91
8
137
50
0
0
50
1.00
30044--30084
3
13.3
3
94
5
73
36
0
0
63
0.95
30009--30084
9
8.4
9
85
5
82
43
0
0
56
0.99
30414--30484
3
23.0
3
82
5
88
64
7
0
28
1.19
32457--32481
2
12.5
2
100
0
50
48
0
0
52
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32481--32518
2
19.0
2
100
0
76
0
0
50
50
1.00
35494--35520
2
13.5
2
100
0
54
48
0
0
51
1.00
35838--35869
2
16.0
2
100
0
64
50
0
0
50
1.00
37522--37597
31
2.5
31
91
4
127
13
11
40
34
1.81
37931--37961
11
2.8
11
95
0
53
48
6
0
45
1.28
38870--38898
15
1.9
15
100
0
58
55
17
0
27
1.42
38980--39036
16
3.6
16
78
4
62
7
10
42
40
1.66
39046--39085
16
2.4
17
83
8
55
5
10
37
47
1.59
43728--43785
20
2.9
19
71
5
53
39
18
13
27
1.89
43969--44009
18
2.3
19
83
12
59
19
19
4
56
1.60
45129--45158
15
2.0
15
93
0
51
10
0
26
63
1.26
46496--46537
18
2.3
18
92
8
68
38
9
0
52
1.34
49958--49995
18
2.1
18
95
0
67
31
23
5
39
1.77

Tables:   1

The End!