genome.fa.s15759.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015759.1 Corchorus capsularis cultivar CVL-1 contig15780, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89663

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1237--1317	32	2.5	32	100	0	162	13	32	8	45	1.74
4208--4298	27	3.4	26	68	14	69	37	7	4	50	1.51
4369--4419	26	2.0	26	96	0	93	37	3	3	54	1.37
8090--9043	441	2.2	438	90	2	1482	27	13	17	41	1.87
11171--11294	23	5.7	23	69	18	102	40	12	0	47	1.41
11205--11311	20	5.1	20	65	20	65	42	12	0	45	1.41
11182--11311	43	3.0	43	98	0	251	41	12	0	46	1.41
13788--13839	26	2.0	26	96	0	95	36	11	5	46	1.64
14639--14889	131	1.9	131	91	2	416	38	9	1	49	1.47
16768--16799	2	16.5	2	93	6	57	46	0	0	53	1.00
18379--18441	30	2.1	30	96	0	117	11	3	22	63	1.41
19162--19208	16	3.1	16	72	12	53	38	0	6	55	1.26
19985--20044	27	2.2	26	82	8	75	18	25	18	38	1.93
19996--20068	27	2.7	27	85	4	85	15	26	17	41	1.89
21524--21549	10	2.6	10	100	0	52	50	19	7	23	1.73
29914--29940	13	2.1	13	100	0	54	44	14	18	22	1.86
30036--30115	27	3.0	26	85	5	106	37	23	18	20	1.94
30473--30524	10	4.8	10	80	15	59	13	48	26	11	1.77
33719--33751	6	5.5	6	100	0	66	30	0	15	54	1.41
40575--40689	39	2.8	41	79	9	128	42	26	11	20	1.85
43124--43203	40	2.0	40	85	4	108	22	22	21	33	1.97
43961--44305	58	5.9	58	93	0	591	40	25	13	20	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43961--44267	26	10.5	31	66	28	169	41	26	13	19	1.88
45130--45224	35	2.7	34	77	6	91	28	28	14	28	1.95
45584--45923	72	4.7	73	90	2	485	21	27	20	30	1.98
47944--48040	30	3.1	30	80	11	115	8	26	39	25	1.84
47962--48026	33	2.0	33	93	0	112	7	26	38	27	1.83
54429--54525	33	3.1	30	77	11	106	8	23	39	28	1.84
56340--56454	39	2.8	42	77	13	114	40	25	12	21	1.88
67448--67735	58	4.9	58	96	0	513	41	18	21	18	1.90
72950--73035	38	2.6	30	73	25	91	38	10	20	30	1.87
74695--74726	15	2.1	16	94	5	57	43	18	25	12	1.85
75149--75266	2	60.5	2	71	17	70	44	3	0	51	1.18
75149--75266	15	8.3	15	66	24	69	44	3	0	51	1.18
75143--75253	41	2.8	41	95	4	201	44	4	0	51	1.22
75617--75706	45	2.0	45	95	4	164	24	22	20	33	1.97
77951--78810	289	3.0	290	97	0	1602	36	13	23	26	1.92
79587--79677	45	2.0	45	100	0	182	26	15	23	35	1.94
79885--79919	18	1.9	18	88	0	52	25	22	5	45	1.74
84713--84763	15	3.2	16	86	10	77	58	5	13	21	1.56
84744--84897	22	7.1	22	73	14	142	51	5	20	21	1.68
84744--84897	42	3.6	43	89	6	206	51	5	20	21	1.68
84780--84919	44	3.2	43	84	6	131	55	5	19	20	1.62
86360--86416	20	2.8	20	86	0	78	50	17	8	22	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87351--87413	29	2.3	28	89	8	94	57	7	12	22	1.61

Tables:   1

The End!