Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015767.1 Corchorus capsularis cultivar CVL-1 contig15788, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59372

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2135--2175
20
2.0
20
100
0
82
48
9
21
19
1.77
2265--2403
70
2.0
70
98
0
269
41
12
15
30
1.85
7197--7244
2
24.0
2
100
0
96
0
0
50
50
1.00
7901--7929
12
2.5
12
94
5
51
17
3
0
79
0.87
18072--18117
1
46.0
1
100
0
92
100
0
0
0
0.00
18653--18689
6
6.2
6
100
0
74
16
16
32
35
1.91
25621--25654
17
1.9
18
88
5
52
35
26
5
32
1.81
27967--27995
2
15.0
2
92
7
51
48
0
0
51
1.00
30040--30079
20
2.0
20
90
0
62
30
5
20
45
1.72
32523--32597
5
14.8
5
85
12
68
0
14
1
84
0.70
32536--32597
6
10.8
6
91
8
87
0
14
0
85
0.60
32523--32596
38
1.9
38
86
5
105
0
14
1
83
0.71
34783--34817
18
1.9
18
88
0
52
42
22
17
17
1.88
45130--45181
27
1.9
27
88
0
77
51
3
26
17
1.62
47062--47128
29
2.4
27
83
9
98
28
13
17
40
1.88
47606--47697
18
5.4
18
73
15
70
53
10
0
35
1.36
47575--47671
49
2.0
49
95
0
176
53
11
1
34
1.44
47593--47672
25
3.2
25
68
16
76
53
10
0
36
1.34
50146--50217
20
3.6
19
69
3
54
34
19
2
43
1.66
52487--52549
19
3.3
18
74
26
58
39
17
3
39
1.66
55366--55786
156
2.7
156
84
5
580
32
17
18
31
1.94
56088--56143
28
2.0
28
89
0
85
32
16
21
30
1.95

Tables:   1

The End!