genome.fa.s15771.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015771.1 Corchorus capsularis cultivar CVL-1 contig15792, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  125979

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12827--13045	35	6.3	35	75	13	177	32	21	9	36	1.86
12827--13110	35	8.8	31	67	19	138	32	20	9	37	1.85
13048--13112	31	2.2	28	82	17	96	30	18	9	41	1.82
27377--27427	24	2.2	23	86	10	68	25	7	0	66	1.18
28607--28635	3	9.7	3	100	0	58	31	0	0	68	0.89
29989--30014	4	6.5	4	100	0	52	26	23	23	26	2.00
30787--30835	5	10.6	5	86	8	61	20	0	22	57	1.41
30788--30834	9	5.2	9	90	10	78	21	0	23	55	1.44
37989--38024	11	3.2	11	88	4	54	0	13	0	86	0.58
37989--38032	23	1.9	23	90	0	70	2	13	0	84	0.73
37989--38032	12	3.7	12	81	9	54	2	13	0	84	0.73
39823--39856	15	2.3	15	89	0	50	73	0	20	5	1.04
40407--40462	29	1.9	29	100	0	112	33	12	14	39	1.83
40488--40595	54	2.0	54	92	0	180	37	14	14	32	1.87
40827--40887	19	3.5	19	68	21	60	42	11	21	24	1.86
40825--40887	33	1.9	33	100	0	126	41	12	20	25	1.88
41424--41489	29	2.2	29	83	2	78	39	25	12	22	1.89
43489--43576	38	2.3	38	92	3	142	51	20	12	15	1.76
43534--43598	29	2.5	25	85	12	78	53	18	9	18	1.70
43702--43735	16	2.1	17	88	5	52	5	29	11	52	1.61
50520--50707	94	2.0	94	98	0	367	21	12	25	40	1.88
51367--51398	8	4.1	8	96	4	57	0	0	9	90	0.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51364--51406	20	2.1	20	91	4	68	0	2	9	88	0.60
63948--64019	30	2.4	30	77	13	85	31	26	11	30	1.91
64509--64550	19	2.3	18	88	8	66	38	2	0	59	1.10
64515--64556	19	2.2	19	86	0	57	42	2	0	54	1.13
65479--65515	3	12.3	3	100	0	74	0	32	0	67	0.91
70663--70694	16	2.1	16	94	5	57	71	0	9	18	1.12
73690--73829	73	2.0	72	86	6	198	49	0	12	37	1.47
73809--73884	39	1.9	39	89	5	118	53	1	11	32	1.45
73734--73955	109	2.0	111	96	2	412	53	1	9	36	1.42
74107--74146	16	2.5	16	100	0	80	37	0	22	40	1.54
74633--74668	19	1.9	20	88	11	58	69	0	0	30	0.89
76804--77313	168	3.0	168	100	0	1020	40	10	23	25	1.85
79374--79412	2	19.5	2	100	0	78	48	0	0	51	1.00
86001--86048	24	2.0	24	100	0	96	33	25	16	25	1.96
91007--91040	8	4.2	8	96	0	59	0	2	11	85	0.71
94782--94841	11	5.5	11	74	7	50	81	13	5	0	0.84
97798--97830	2	16.5	2	100	0	66	51	0	0	48	1.00
98082--98137	19	2.7	20	84	15	69	46	0	0	53	1.00
109709--109784	1	76.0	1	86	0	98	92	1	6	0	0.45
110070--110103	2	17.0	2	100	0	68	50	0	0	50	1.00
110221--110262	21	2.0	21	100	0	84	14	19	19	47	1.82
110742--110791	25	2.0	25	96	0	91	48	10	16	26	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
119978--120055	28	2.6	30	78	8	88	32	19	14	34	1.91
122119--122144	11	2.4	11	100	0	52	15	11	57	15	1.65
122766--122874	51	2.1	51	100	0	218	31	14	23	30	1.95
124902--124934	1	33.0	1	100	0	66	100	0	0	0	0.00

Tables:   1

The End!