Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015777.1 Corchorus capsularis cultivar CVL-1 contig15798, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28498

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--29
1
29.0
1
100
0
58
100
0
0
0
0.00
3405--3434
14
2.1
14
100
0
60
16
6
20
56
1.62
5467--5517
25
2.0
25
88
7
77
19
13
19
47
1.83
11462--11505
17
2.6
17
89
3
63
11
6
43
38
1.67
11479--11551
32
2.3
32
85
0
92
10
12
42
34
1.78
11459--11551
16
5.8
16
71
14
66
10
11
40
36
1.77
11693--11731
20
2.0
20
85
10
53
35
5
5
53
1.45
11751--11838
16
5.5
16
73
10
63
7
11
28
52
1.65
11751--11840
32
2.8
32
84
0
108
7
11
28
52
1.65
11760--11844
16
5.3
16
70
5
64
7
9
30
52
1.60
20244--20415
31
5.5
31
85
0
200
19
23
24
32
1.98
27061--27091
16
1.9
16
93
0
53
35
6
0
58
1.24
27554--28003
231
1.9
230
85
1
623
34
19
13
32
1.91
27778--28468
192
3.5
193
80
6
816
34
18
13
33
1.90

Tables:   1

The End!