Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015782.1 Corchorus capsularis cultivar CVL-1 contig15803, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41649

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1923--2012
21
4.3
20
75
8
72
21
20
7
51
1.72
1925--2056
42
3.4
38
74
18
121
21
19
8
50
1.74
2007--2405
22
18.5
22
69
18
173
18
20
6
54
1.65
2020--2054
16
2.2
16
94
0
61
20
17
8
54
1.68
2037--2357
43
7.2
43
74
17
248
17
20
5
55
1.62
2117--2405
21
13.6
21
72
15
184
18
20
5
55
1.63
2008--2374
86
4.2
85
75
15
263
18
20
5
54
1.65
2682--2881
55
3.6
55
86
1
285
25
18
7
49
1.72
2695--2839
29
5.2
29
63
18
74
24
19
7
48
1.75
2878--2937
22
2.7
22
89
5
86
21
21
5
51
1.66
9105--9140
19
1.9
18
88
5
54
33
22
2
41
1.68
14994--15031
1
38.0
1
100
0
76
100
0
0
0
0.00
16451--16495
23
2.0
23
100
0
90
62
8
28
0
1.25
21103--21132
2
15.0
2
100
0
60
50
0
0
50
1.00
21280--21464
92
2.0
92
88
0
271
21
11
23
42
1.86
22239--22275
1
37.0
1
100
0
74
0
0
0
100
0.00
36729--36766
17
2.2
18
85
4
51
47
0
7
44
1.32
36938--36971
3
11.3
3
100
0
68
64
0
0
35
0.94
37354--37393
20
2.0
20
85
5
53
20
15
7
57
1.61

Tables:   1

The End!