genome.fa.s15784.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015784.1 Corchorus capsularis cultivar CVL-1 contig15805, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  98704

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3921--4034	3	37.7	3	89	5	95	63	9	0	27	1.26
4709--4741	1	33.0	1	100	0	66	100	0	0	0	0.00
12524--12582	27	2.2	27	93	0	100	27	27	11	33	1.92
31681--31740	32	1.9	30	83	6	75	35	18	10	36	1.84
35693--35718	2	13.0	2	100	0	52	50	0	0	50	1.00
36174--36207	17	1.9	17	88	5	50	14	14	14	55	1.69
38721--38760	21	1.9	21	94	0	71	7	20	15	57	1.61
45360--45442	41	2.0	41	90	0	130	28	18	31	21	1.97
45549--45573	9	2.8	9	100	0	50	36	0	0	64	0.94
46310--46371	33	1.9	32	90	9	99	8	38	38	14	1.76
46310--46437	32	3.9	32	72	16	100	11	39	35	14	1.82
46485--46606	33	3.8	33	93	2	194	10	31	43	14	1.80
51217--51315	40	2.5	41	83	11	125	50	6	19	24	1.70
51306--51369	16	3.6	17	67	20	51	53	3	25	18	1.59
51457--51501	14	3.3	14	78	3	56	55	4	22	17	1.60
51521--51561	14	3.0	13	85	7	55	51	7	17	24	1.70
51511--51577	28	2.3	29	73	19	68	53	5	17	22	1.65
54127--54157	12	2.6	12	94	0	53	41	0	58	0	0.98
54698--54815	16	7.4	16	82	5	150	7	21	36	34	1.82
54692--54827	32	4.3	32	86	3	177	8	21	36	34	1.83
54692--54842	16	9.5	16	79	8	148	7	21	36	33	1.83
55660--55791	16	8.2	16	77	6	133	9	21	37	31	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55658--55791	32	4.2	32	87	3	173	8	22	37	31	1.85
55658--55791	48	2.8	47	80	15	157	8	22	37	31	1.85
56095--56137	21	2.0	22	86	4	61	18	37	9	34	1.83
56476--56500	13	1.9	13	100	0	50	0	16	0	84	0.63
63085--63115	8	3.9	8	100	0	62	12	22	25	38	1.90
70996--71040	20	2.2	20	88	0	63	26	2	2	68	1.12
76008--76043	13	2.8	13	95	4	65	38	22	0	38	1.54
76470--76507	3	13.0	3	89	10	53	28	2	0	68	1.03
83301--83330	3	10.0	3	100	0	60	66	0	33	0	0.92
84607--84880	108	2.5	109	91	5	419	37	10	2	49	1.50
89970--90002	15	2.2	15	94	0	57	84	12	3	0	0.72
92706--92754	27	1.9	26	88	12	75	57	16	24	2	1.50
98318--98702	137	2.8	136	90	3	614	31	11	18	38	1.87

Tables:   1

The End!