Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01015789.1 Corchorus capsularis cultivar CVL-1 contig15810, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 654

Length: 1091
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.28


Found at i:504 original size:33 final size:33

Alignment explanation


    Indices: 467--537  Score: 99
    Period size: 33  Copynumber: 2.2  Consensus size: 33

        457 CCGAGTCGTT

                                              
        467 TGGCCGGTTG-TAGCCGGACATGTCCATGTCGCA
          1 TGGCCGG-TGATAGCCGGACATGTCCATGTCGCA

                       *     *              *
        500 TGGCCGGTGATGGCCGGGCATGTCCATGTCGCG
          1 TGGCCGGTGATAGCCGGACATGTCCATGTCGCA

                 
        533 TGGCC
          1 TGGCC

        538 AGTCGCGTGG


Statistics
Matches: 34,  Mismatches: 3, Indels: 2
        0.87            0.08        0.05

Matches are distributed among these distances:
  32    2  0.06
  33   32  0.94

ACGTcount: A:0.11, C:0.28, G:0.38, T:0.23


Consensus pattern (33 bp):   
TGGCCGGTGATAGCCGGACATGTCCATGTCGCA

Found at i:561 original size:12 final size:12

Alignment explanation


    Indices: 527--553  Score: 54
    Period size: 12  Copynumber: 2.2  Consensus size: 12

        517 GCATGTCCAT

                        
        527 GTCGCGTGGCCA
          1 GTCGCGTGGCCA

                        
        539 GTCGCGTGGCCA
          1 GTCGCGTGGCCA

               
        551 GTC
          1 GTC

        554 TTGTGGCCGG


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   15  1.00

ACGTcount: A:0.07, C:0.33, G:0.41, T:0.19


Consensus pattern (12 bp):   
GTCGCGTGGCCA
Done.