Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001579.1 Corchorus capsularis cultivar CVL-1 contig01579, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2424
ACGTcount: A:0.39, C:0.16, G:0.17, T:0.28


Found at i:2031 original size:2 final size:2

Alignment explanation


    Indices: 2018--2047  Score: 51
    Period size: 2  Copynumber: 14.5  Consensus size: 2

       2008 ATACTTTTAG

                                                        
       2018 AT AT AGT AT AT AT AT AT AT AT AT AT AT AT A
          1 AT AT A-T AT AT AT AT AT AT AT AT AT AT AT A

       2048 CATCCTCCTT


Statistics
Matches: 27,  Mismatches: 0, Indels: 2
        0.93            0.00        0.07

Matches are distributed among these distances:
   2   25  0.93
   3    2  0.07

ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47


Consensus pattern (2 bp):   
AT

Found at i:2384 original size:2 final size:2

Alignment explanation


    Indices: 2377--2419  Score: 86
    Period size: 2  Copynumber: 21.5  Consensus size: 2

       2367 TGATCTGAAA

                                                                          
       2377 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
          1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG

             
       2419 A
          1 A

       2420 AGAAG


Statistics
Matches: 41,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   41  1.00

ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00


Consensus pattern (2 bp):   
AG

Done.