Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015791.1 Corchorus capsularis cultivar CVL-1 contig15812, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88775

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5298--5349
26
2.0
26
92
0
86
23
9
15
51
1.72
5354--5386
15
2.3
15
89
5
50
15
12
0
72
1.12
7324--7376
20
2.7
20
100
0
106
64
5
9
20
1.44
7326--7393
10
6.4
11
69
17
54
63
5
8
22
1.45
9850--9881
16
2.1
16
94
5
57
46
0
12
40
1.42
17313--17459
36
4.2
36
82
10
205
28
19
9
42
1.83
17322--17458
68
2.0
69
91
5
222
28
20
9
41
1.83
17327--17490
68
2.4
64
84
9
195
28
21
10
39
1.87
17438--17509
32
2.2
32
95
4
128
29
23
11
36
1.89
17505--17809
41
7.6
41
90
2
451
23
22
8
44
1.81
17505--17809
81
3.8
81
90
3
449
23
22
8
44
1.81
17505--17809
122
2.5
121
90
3
474
23
22
8
44
1.81
17824--17917
34
2.7
34
91
1
143
27
11
10
50
1.72
17935--18472
38
14.4
37
82
7
565
25
20
9
44
1.81
17935--18472
74
7.2
75
87
4
637
25
20
9
44
1.81
17935--18472
112
4.8
110
81
8
588
25
20
9
44
1.81
21147--21207
25
2.4
25
91
2
95
42
27
11
18
1.84
21294--21340
25
1.9
24
91
4
76
29
17
4
48
1.65
21341--21380
21
2.0
20
90
5
62
42
12
15
30
1.83
25555--25610
25
2.3
25
87
3
78
67
7
7
17
1.37
30836--30959
33
3.7
32
80
12
135
7
26
41
24
1.80
33938--33994
21
2.7
21
80
0
69
36
10
22
29
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46178--46207
12
2.5
12
94
0
51
20
33
33
13
1.91
48054--48088
13
2.7
13
90
0
52
20
8
8
62
1.49
49116--49141
9
2.9
9
100
0
52
88
0
0
11
0.52
56197--56254
15
3.9
14
80
8
62
37
22
27
12
1.89
56195--56253
30
2.0
30
86
6
84
38
22
27
11
1.89
57659--57689
16
1.9
16
93
0
53
19
6
19
54
1.65
61960--62045
30
2.9
30
98
0
163
16
31
18
33
1.93
63255--63279
10
2.5
10
100
0
50
48
20
8
24
1.76
64228--64260
6
5.5
6
92
0
57
30
3
12
54
1.52
69700--69759
30
2.0
30
100
0
120
16
30
20
33
1.94
77789--77821
11
3.0
11
95
0
57
42
27
30
0
1.56
82048--82087
19
2.3
17
87
12
55
47
5
0
47
1.24
82590--82705
58
2.0
58
98
0
223
23
20
31
25
1.98

Tables:   1

The End!