Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015792.1 Corchorus capsularis cultivar CVL-1 contig15813, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  121784

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
452--591
11
13.3
11
64
22
59
48
0
0
50
1.05
488--629
46
3.1
46
81
4
196
48
0
1
50
1.09
454--629
92
1.9
94
88
6
270
48
0
1
50
1.08
452--591
2
76.5
2
68
17
63
48
0
0
50
1.05
1730--1770
21
2.0
21
85
0
55
29
17
12
41
1.85
22444--22775
178
1.9
178
84
3
454
34
15
15
34
1.89
23484--23525
21
2.0
21
86
9
59
11
0
33
54
1.37
26069--26144
39
1.9
39
84
7
100
18
21
22
38
1.94
25998--26157
31
4.9
31
78
11
140
19
23
21
35
1.96
39943--39974
2
16.0
2
100
0
64
50
0
0
50
1.00
56985--57040
23
2.4
23
80
11
69
33
35
19
10
1.87
57050--57094
16
2.8
16
79
0
54
51
33
8
6
1.59
65709--65764
27
2.0
28
89
6
87
53
5
12
28
1.60
66585--66671
40
2.2
40
93
0
147
43
14
9
32
1.77
67153--67181
2
14.5
2
100
0
58
51
0
0
48
1.00
69876--69918
19
2.3
18
80
11
50
4
11
2
81
0.93
72237--72281
2
22.5
2
93
0
72
53
44
0
2
1.13
80065--80112
24
2.0
24
95
0
87
25
35
8
31
1.85
80265--80349
34
2.5
33
86
5
118
23
7
4
64
1.38
84382--84427
19
2.3
20
85
7
67
30
4
17
47
1.67
84848--84903
11
4.9
11
77
16
60
58
10
0
30
1.32
84854--84914
21
2.7
23
80
10
63
54
13
1
31
1.49
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
85031--85094
32
2.0
32
93
0
110
42
12
12
32
1.80
89893--89918
2
13.0
2
100
0
52
50
0
0
50
1.00
93562--93586
12
2.1
12
100
0
50
0
8
0
92
0.40
94513--94542
2
15.0
2
100
0
60
50
0
0
50
1.00
98217--98276
30
2.0
30
96
0
111
18
26
21
33
1.96
103413--103482
9
8.2
8
72
15
52
2
20
0
77
0.90
103436--103482
14
3.4
14
77
11
60
0
19
0
80
0.70
103413--103481
26
2.6
27
86
9
88
2
20
0
76
0.91
109175--109234
29
2.1
29
100
0
120
36
13
21
28
1.91
109576--109896
22
14.6
21
72
16
92
42
4
21
30
1.74
109727--110037
14
21.5
14
68
20
80
42
4
23
30
1.74
109606--110016
8
55.2
8
63
20
87
42
4
22
29
1.74
109668--110083
58
7.1
58
72
16
249
42
4
23
29
1.74
109792--109902
6
16.2
6
73
22
53
44
4
20
30
1.72
109791--109904
47
2.3
49
81
11
128
42
5
21
29
1.75
109819--109982
25
7.0
25
74
14
95
43
4
21
29
1.73
109928--109974
17
2.8
17
83
0
58
42
2
21
34
1.65
109664--110041
28
13.0
28
68
24
128
42
4
22
30
1.74
110148--110217
14
5.5
14
70
19
55
40
7
20
32
1.79
110248--110310
21
3.0
22
77
15
62
46
3
20
30
1.66
110297--110361
30
2.2
28
83
5
76
46
7
20
26
1.77
110517--110634
19
6.4
19
78
11
129
33
7
28
29
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110519--110657
72
1.9
72
94
2
244
34
7
28
30
1.84
111935--111960
12
2.2
12
100
0
52
23
0
15
61
1.33
120151--120183
6
5.7
6
96
3
59
54
12
0
33
1.37

Tables:   1

The End!