Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01015794.1 Corchorus capsularis cultivar CVL-1 contig15815, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7220
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32


Found at i:2516 original size:21 final size:21

Alignment explanation


    Indices: 2490--2536  Score: 58
    Period size: 21  Copynumber: 2.2  Consensus size: 21

       2480 GCTGGGGGCT

                        * *   *  
       2490 CATGTGGTATGCTTGGCGCCC
          1 CATGTGGTATGCCTCGCGACC

                    *            
       2511 CATGTGGTTTGCCTCGCGACC
          1 CATGTGGTATGCCTCGCGACC

                 
       2532 CATGT
          1 CATGT

       2537 CCTCTAGTGC


Statistics
Matches: 22,  Mismatches: 4, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  21   22  1.00

ACGTcount: A:0.11, C:0.30, G:0.30, T:0.30


Consensus pattern (21 bp):   
CATGTGGTATGCCTCGCGACC
Done.