Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015800.1 Corchorus capsularis cultivar CVL-1 contig15821, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36091

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12350--12434
26
3.2
26
66
21
75
47
7
17
28
1.74
12348--12581
55
4.3
55
93
1
371
48
5
17
28
1.70
12361--12445
26
3.2
26
66
21
75
47
7
20
25
1.75
12467--12550
25
3.2
25
65
23
64
50
3
19
27
1.64
12348--12581
109
2.1
110
91
0
371
48
5
17
28
1.70
12590--12812
35
6.1
35
91
4
338
37
8
17
37
1.80
12693--12812
43
3.0
40
80
17
142
38
8
17
35
1.80
12719--12911
99
1.9
99
95
0
350
38
6
19
35
1.78
12824--13051
43
5.1
43
85
7
312
37
6
18
37
1.77
12719--13050
142
2.4
136
88
3
493
38
6
18
36
1.77
12907--13014
50
2.1
51
93
1
182
36
6
18
38
1.77
12859--13051
93
2.1
94
90
1
298
37
6
19
37
1.77
13088--13163
35
2.2
35
87
0
107
39
6
15
38
1.74
20142--20174
6
5.5
6
100
0
66
54
15
0
30
1.41
20171--20205
13
2.7
13
95
0
61
60
8
11
20
1.57
21116--21140
10
2.5
10
100
0
50
24
8
20
48
1.76
30932--30957
10
2.6
10
100
0
52
50
19
7
23
1.73
31902--31934
6
5.5
6
100
0
66
30
0
15
54
1.41
34051--34280
75
2.9
76
83
14
272
33
14
6
45
1.71
34133--34293
86
1.9
86
92
5
272
32
14
6
45
1.70
33987--34280
161
1.8
162
91
3
495
33
15
6
43
1.74
34141--34313
86
2.0
86
86
6
226
32
13
6
46
1.69
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35548--36090
35
15.5
35
89
4
625
32
20
17
29
1.96

Tables:   1

The End!