genome.fa.s15802.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015802.1 Corchorus capsularis cultivar CVL-1 contig15823, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25843

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2860--3094	75	3.0	76	81	11	269	32	14	5	46	1.69
2942--3102	86	1.9	86	90	5	263	32	14	6	46	1.70
2796--3093	161	1.8	161	89	3	474	33	16	6	43	1.73
13008--13119	33	3.4	33	80	8	113	11	26	38	23	1.89
13717--13789	28	2.6	28	91	0	110	15	12	28	43	1.82
17374--17469	38	2.5	38	81	6	113	51	8	19	20	1.73
17461--17533	32	2.3	31	81	6	83	45	6	26	21	1.77
17607--17716	32	3.5	32	83	3	136	54	3	24	17	1.59
17695--17837	40	3.6	40	97	0	259	54	2	19	23	1.57
17836--17890	16	3.1	17	73	19	58	56	3	21	18	1.57
17695--17890	40	5.0	39	83	14	153	54	3	20	21	1.58
17844--17968	35	3.5	36	80	11	116	56	3	19	21	1.56
17940--17995	27	2.1	26	90	9	87	55	3	14	26	1.55
17997--18071	7	10.9	7	77	7	64	58	2	22	16	1.50
17980--18050	28	2.5	28	84	11	92	57	2	22	16	1.52
17980--18066	28	3.0	30	81	9	76	57	3	21	17	1.54
18118--18197	32	2.5	32	93	0	133	51	5	26	17	1.66
18143--18203	16	3.9	16	78	18	74	55	3	22	18	1.56
18232--18340	32	3.5	32	76	20	115	53	3	18	24	1.61
18232--18314	32	2.5	33	84	13	116	53	3	19	24	1.61
18247--18341	26	3.4	26	83	12	93	52	4	16	26	1.62
18343--18417	7	10.9	7	77	7	64	58	2	22	16	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18326--18396	28	2.5	28	84	11	92	57	2	22	16	1.52
18326--18412	28	3.0	30	81	9	76	57	3	21	17	1.54
18465--18542	32	2.4	32	93	0	129	50	5	26	17	1.67
18490--18542	16	3.3	16	75	19	65	54	3	22	18	1.59
18515--18623	40	2.7	40	94	0	182	54	2	21	22	1.58
17844--18542	347	2.0	352	96	2	1315	55	3	20	19	1.58
18621--18654	16	2.1	17	88	5	52	58	2	20	17	1.51
18515--18639	40	3.2	39	88	7	166	53	3	21	21	1.60
18666--18748	32	2.5	33	84	13	116	53	3	19	24	1.61
18681--18773	32	3.4	26	82	12	91	52	4	16	26	1.62
18775--18850	7	10.9	7	77	4	64	60	2	21	15	1.47
18784--18957	40	4.8	37	72	22	138	57	4	20	17	1.57
18803--18920	7	16.1	7	68	15	51	57	4	20	17	1.56
18863--18971	14	7.9	13	74	17	80	55	5	19	20	1.63
18864--18971	28	3.9	28	73	13	91	55	4	19	20	1.60
18825--18971	68	2.2	67	95	1	258	55	5	20	19	1.63
18960--19092	7	18.9	7	64	16	51	54	3	26	16	1.57
18955--19036	35	2.3	35	82	14	71	56	3	23	17	1.57
18982--19071	35	2.6	34	89	1	135	52	3	26	17	1.60
18757--19028	14	18.6	14	65	18	65	56	4	21	17	1.57
19051--19114	29	2.2	28	83	10	76	54	4	20	20	1.62
19059--19122	15	4.4	14	75	16	67	56	4	17	21	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19059--19490	43	10.3	43	70	20	237	52	6	20	21	1.67
19125--19335	22	9.8	22	77	11	204	52	6	19	21	1.68
19059--19156	15	6.7	15	65	26	50	55	5	17	22	1.62
19098--19335	64	3.7	62	82	11	275	52	5	19	21	1.66
19120--19409	101	2.8	101	79	10	261	52	6	19	21	1.68
19324--19445	22	5.6	21	73	12	95	52	6	21	19	1.68
19377--19439	23	2.9	22	81	6	65	53	7	19	19	1.68
19476--19531	17	3.0	20	76	15	64	57	3	19	19	1.56
19471--19558	17	5.1	17	67	17	56	61	4	17	17	1.51
19942--19996	21	2.6	21	80	5	58	18	7	9	65	1.44
20227--20274	18	2.7	18	81	12	55	4	22	0	72	1.01
20243--20292	17	2.8	17	84	9	55	2	22	0	76	0.89
20233--20293	26	2.3	27	82	2	79	4	22	0	72	1.04
21987--22022	19	1.9	18	88	5	54	41	5	22	30	1.76
23301--23374	23	3.1	23	72	14	60	20	6	9	63	1.47

Tables:   1

The End!