Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015805.1 Corchorus capsularis cultivar CVL-1 contig15826, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43188

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4856--5190
105
3.0
112
61
22
263
41
11
9
37
1.74
4802--5218
217
1.9
219
97
1
793
40
11
9
38
1.74
5223--5271
25
1.9
26
87
4
73
36
4
18
40
1.70
5885--5989
33
3.2
33
91
0
165
35
19
19
26
1.95
5988--6048
29
2.1
29
90
0
95
32
21
14
31
1.93
6068--6170
54
1.9
54
97
0
197
30
20
12
36
1.90
7453--7550
35
2.8
35
87
0
142
34
16
24
24
1.95
7793--7952
83
1.9
82
89
3
250
26
15
17
40
1.89
11392--11438
22
2.1
22
88
0
67
44
6
21
27
1.76
11768--11812
22
2.0
22
82
8
54
37
11
8
42
1.72
14007--14050
22
2.0
22
95
0
79
40
11
6
40
1.68
16244--16373
65
2.0
65
98
0
251
35
5
4
54
1.44
16406--16480
37
2.0
37
100
0
150
46
21
13
18
1.83
23666--23734
33
2.1
33
94
0
120
15
30
4
49
1.64
26973--27018
15
3.1
15
75
12
58
34
28
19
17
1.94
30386--30691
86
3.7
85
84
12
402
42
6
16
33
1.74
30394--30691
161
1.8
162
92
3
503
42
6
17
33
1.75
35703--35758
24
2.2
26
84
6
71
71
0
19
8
1.12
36077--36134
8
7.4
8
75
9
57
82
0
15
1
0.74
36077--36132
20
2.8
19
82
15
69
82
0
16
1
0.76
37204--37838
35
18.1
35
91
3
976
29
15
21
33
1.94
37225--38042
35
23.3
35
87
4
442
29
16
20
34
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37204--38042
70
12.0
70
89
4
951
29
16
20
34
1.94

Tables:   1

The End!