Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015807.1 Corchorus capsularis cultivar CVL-1 contig15828, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22466

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
547--586
21
1.9
21
94
0
71
10
27
15
47
1.77
4221--4470
67
3.5
67
71
19
232
40
17
5
36
1.73
4205--4555
152
2.3
151
93
1
596
39
16
5
38
1.72
6605--6706
49
2.0
50
94
5
179
41
6
16
35
1.75
8605--8680
21
3.6
21
89
0
107
22
6
17
53
1.66
8608--8700
42
2.2
42
83
5
109
22
7
15
54
1.65
9154--9227
33
2.2
33
85
4
96
27
9
18
44
1.81
9674--9736
30
2.1
30
91
5
101
30
17
33
19
1.95
12214--12291
32
2.5
31
89
4
120
57
11
12
17
1.64
14160--14374
107
2.0
110
92
2
364
14
26
23
35
1.93
15928--15959
6
5.5
6
96
3
57
56
12
0
31
1.37

Tables:   1

The End!