Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015809.1 Corchorus capsularis cultivar CVL-1 contig15830, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37134

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1351--1393
16
2.8
16
82
3
61
32
27
25
13
1.94
2584--2655
35
2.1
35
94
0
126
30
16
15
37
1.90
3538--3571
2
17.0
2
93
0
59
47
0
0
52
1.00
3696--3804
53
2.0
54
91
1
175
35
7
6
50
1.56
3808--3885
23
3.1
23
76
16
75
37
5
6
51
1.50
6557--6589
2
17.0
2
87
6
50
51
3
0
45
1.16
7217--7283
27
2.5
26
82
2
89
20
17
25
35
1.95
7709--7745
17
2.2
17
100
0
74
29
10
10
48
1.72
11178--11225
18
2.6
19
80
6
53
79
2
16
2
0.93
12386--12817
72
6.0
72
92
0
677
16
33
24
25
1.96
13261--13508
90
2.7
91
88
3
349
39
17
11
31
1.85
13581--13656
27
2.8
27
80
9
91
15
11
25
47
1.80
13974--14004
4
7.8
4
92
0
53
22
0
3
74
0.96
18050--18148
49
2.0
49
98
0
189
21
27
27
24
1.99
19692--19719
14
2.0
14
100
0
56
42
14
14
28
1.84
19996--20061
24
2.6
25
81
11
82
78
0
18
3
0.87
19996--20058
26
2.4
26
79
10
67
79
0
17
3
0.86
19996--20064
11
6.4
11
73
15
56
79
0
17
2
0.85
20021--20061
21
2.0
21
85
9
57
80
0
17
2
0.82
20019--20056
19
2.0
20
89
5
60
81
0
15
2
0.80
20265--20302
6
6.3
6
100
0
76
84
0
15
0
0.63
20256--20323
32
2.2
31
84
10
93
82
0
16
1
0.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
21333--21474
35
4.0
34
79
7
151
15
22
23
38
1.93
21566--21674
35
3.0
36
79
4
121
17
13
26
42
1.87
21417--21968
191
2.9
190
93
1
908
19
17
23
39
1.92
21758--21865
36
3.0
36
75
5
103
17
15
25
40
1.89
21433--22039
191
3.2
191
87
3
742
19
17
23
39
1.93
21845--22406
71
8.0
70
88
1
795
21
18
21
37
1.94
21845--22394
211
2.6
212
90
1
863
21
18
21
38
1.94
22399--22468
34
2.1
34
84
10
90
20
15
24
40
1.91
24266--24303
6
6.5
6
96
3
69
31
0
13
55
1.38
30744--30820
28
2.8
28
82
5
93
16
11
24
46
1.81
35157--35254
49
2.0
49
95
0
178
22
25
27
24
2.00
35207--35376
86
2.0
86
96
0
313
24
22
25
27
2.00

Tables:   1

The End!