Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015815.1 Corchorus capsularis cultivar CVL-1 contig15836, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65317

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1556--1816
128
2.0
128
95
1
470
45
23
11
19
1.83
3354--3457
46
2.2
47
86
1
138
27
37
22
12
1.90
3354--3462
23
4.7
23
82
1
119
27
37
21
13
1.91
3601--3664
27
2.4
26
86
2
83
31
39
15
14
1.87
11758--11820
33
1.9
33
90
0
99
9
26
42
20
1.83
11830--11871
21
2.0
21
85
0
57
16
28
33
21
1.95
13687--13780
33
2.8
32
78
15
102
40
20
8
30
1.82
16171--16249
33
2.4
33
100
0
158
13
29
43
13
1.83
16145--16200
23
2.4
23
96
0
103
14
26
44
14
1.83
16237--16328
33
2.8
32
81
3
103
9
29
39
21
1.86
18446--18548
40
2.6
40
81
7
111
43
25
15
15
1.86
20689--20762
33
2.2
33
83
9
89
24
39
28
8
1.84
27185--27291
33
3.2
33
84
2
135
23
38
28
9
1.86
28345--28374
10
2.9
10
95
5
51
86
0
0
13
0.57
30684--30742
30
2.0
30
86
6
84
23
30
15
30
1.95
31114--31219
33
3.3
33
80
3
110
41
18
9
30
1.82
33815--33867
21
2.5
21
100
0
106
35
18
18
26
1.95
39020--39051
12
2.7
12
90
0
55
21
43
25
9
1.82
42554--42589
6
6.0
6
100
0
72
66
0
0
33
0.92
50534--50688
33
4.7
33
89
4
208
25
44
21
8
1.80
60969--61075
33
3.2
32
84
10
128
23
40
24
12
1.88
62321--62399
37
2.1
38
90
4
124
36
17
8
36
1.81

Tables:   1

The End!