Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01015817.1 Corchorus capsularis cultivar CVL-1 contig15838, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2287
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.29


Found at i:1923 original size:10 final size:10

Alignment explanation


    Indices: 1908--1944  Score: 74
    Period size: 10  Copynumber: 3.7  Consensus size: 10

       1898 CCATGTCGCG

                      
       1908 TGGCCGGTGA
          1 TGGCCGGTGA

                      
       1918 TGGCCGGTGA
          1 TGGCCGGTGA

                      
       1928 TGGCCGGTGA
          1 TGGCCGGTGA

                   
       1938 TGGCCGG
          1 TGGCCGG

       1945 ACATGTCCAT


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  10   27  1.00

ACGTcount: A:0.08, C:0.22, G:0.51, T:0.19


Consensus pattern (10 bp):   
TGGCCGGTGA
Done.