Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015826.1 Corchorus capsularis cultivar CVL-1 contig15847, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23740

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1480--1529
18
2.8
18
68
14
50
8
14
6
72
1.27
1927--1976
18
2.9
17
76
5
55
8
16
2
74
1.15
2336--2400
32
2.0
32
90
0
103
23
30
15
30
1.95
3132--3404
35
7.7
35
86
8
365
34
17
9
38
1.83
8939--8980
23
1.9
21
85
9
57
28
19
16
35
1.93
9619--9772
77
2.0
77
98
0
299
37
17
12
31
1.88
12173--12206
13
2.6
13
90
0
59
52
2
11
32
1.53
12276--12320
19
2.6
18
83
16
60
11
11
2
75
1.13
12286--12323
19
2.1
19
95
5
69
7
15
5
71
1.28
16193--16290
32
3.1
33
78
8
96
23
13
24
38
1.90
22782--23219
170
2.6
166
82
5
524
40
15
15
28
1.87
23330--23370
17
2.4
17
95
0
73
36
14
0
48
1.44
23530--23565
2
18.5
2
94
5
65
47
0
0
52
1.00

Tables:   1

The End!