genome.fa.s15827.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015827.1 Corchorus capsularis cultivar CVL-1 contig15848, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18166

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1416--1470	13	4.1	14	73	22	55	41	0	3	54	1.18
1601--1651	17	2.9	18	77	5	52	31	43	21	3	1.71
1608--1651	23	1.9	23	90	0	70	34	40	20	4	1.73
1639--1685	16	2.9	17	81	9	62	42	36	12	8	1.74
2383--2698	106	3.0	104	84	6	402	45	7	8	37	1.64
4192--4506	154	2.0	154	88	1	461	25	17	16	41	1.89
4898--4932	2	17.0	2	94	5	61	48	0	2	48	1.16
5785--5827	21	2.0	21	82	8	52	13	30	6	48	1.69
6181--6246	33	2.0	33	85	5	89	18	33	36	12	1.88
6268--6315	25	1.9	25	91	0	78	41	0	4	54	1.20
8046--8072	2	13.5	2	100	0	54	51	0	0	48	1.00
9530--9649	32	3.8	32	86	2	152	31	36	21	10	1.87
9528--9661	16	8.4	16	72	9	103	32	35	20	10	1.87
10487--10560	32	2.4	31	80	10	87	33	43	16	6	1.74
10503--10571	31	2.2	32	89	7	106	36	39	17	7	1.77
10503--10588	16	5.5	15	77	12	75	37	36	17	9	1.82
10488--10589	47	2.2	48	81	10	113	36	38	16	8	1.80
10503--10588	31	2.7	31	82	5	84	37	36	17	9	1.82
11651--11721	37	1.9	37	94	0	124	38	8	16	36	1.80
14654--14946	24	11.8	24	91	4	406	17	19	35	26	1.94
14654--14986	50	6.9	48	82	11	423	17	19	35	27	1.94
14649--14946	150	2.0	149	92	2	490	17	19	35	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14931--14961	15	2.1	15	93	0	53	16	19	32	32	1.94
14680--14946	74	3.6	72	88	6	300	17	19	35	26	1.94
14941--14986	24	2.0	23	91	8	76	17	21	34	26	1.95
14905--14985	41	2.0	40	90	4	128	16	18	35	29	1.92
15229--15312	23	3.4	22	72	24	78	50	5	5	38	1.51
17324--17372	25	2.0	25	95	0	89	12	30	20	36	1.89
17700--17748	23	2.1	24	84	3	64	40	2	14	42	1.57

Tables:   1

The End!